Class/Object

org.bdgenomics.adam.models

SequenceRecord

Related Docs: object SequenceRecord | package models

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case class SequenceRecord(name: String, length: Long, url: Option[String], md5: Option[String], refseq: Option[String], genbank: Option[String], assembly: Option[String], species: Option[String], referenceIndex: Option[Int]) extends Serializable with Product

Utility class within the SequenceDictionary; represents unique reference name-to-id correspondence

Linear Supertypes
Product, Equals, Serializable, Serializable, AnyRef, Any
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Inherited
  1. SequenceRecord
  2. Product
  3. Equals
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new SequenceRecord(name: String, length: Long, url: Option[String], md5: Option[String], refseq: Option[String], genbank: Option[String], assembly: Option[String], species: Option[String], referenceIndex: Option[Int])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. val assembly: Option[String]

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  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def equals(o: Any): Boolean

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    Definition Classes
    SequenceRecord → Equals → AnyRef → Any

  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. val genbank: Option[String]

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  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  13. val length: Long

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  14. val md5: Option[String]

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  15. val name: String

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  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  17. final def notify(): Unit

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    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  19. val referenceIndex: Option[Int]

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  20. val refseq: Option[String]

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  21. val species: Option[String]

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  22. def stripIndex: SequenceRecord

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    returns

    Returns a new sequence record with the index unset.

  23. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  24. def toSAMSequenceRecord: SAMSequenceRecord

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    Converts this sequence record into a SAM sequence record.

    Converts this sequence record into a SAM sequence record.

    returns

    A SAM formatted sequence record.

  25. def toString(): String

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    Definition Classes
    SequenceRecord → AnyRef → Any

  26. val url: Option[String]

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  27. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  29. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped