org.bdgenomics.adam.algorithms

smithwaterman

package smithwaterman

Visibility
  1. Public
  2. All

Type Members

  1. trait SmithWaterman extends Serializable

    Abstract class for implementing a Smith-Waterman pairwise alignment.

  2. case class SmithWatermanConstantGapScoring(xSequence: String, ySequence: String, wMatch: Double, wMismatch: Double, wInsert: Double, wDelete: Double) extends SmithWatermanGapScoringFromFn with Product with Serializable

    Performs a pairwise alignment of two sequences using constant penalties.

Ungrouped