org.bdgenomics.adam.rdd.variant

VCFOutFormatter

case class VCFOutFormatter() extends OutFormatter[VariantContext] with Product with Serializable

OutFormatter that reads streaming VCF.

Linear Supertypes
Product, Equals, OutFormatter[VariantContext], Serializable, Serializable, AnyRef, Any
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Inherited
  1. VCFOutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Instance Constructors

  1. new VCFOutFormatter()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  12. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  13. final def notify(): Unit

    Definition Classes
    AnyRef
  14. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  15. def read(is: InputStream): Iterator[VariantContext]

    Reads VariantContexts from an input stream.

    Reads VariantContexts from an input stream. Autodetects VCF format.

    is

    An InputStream connected to a process we are piping from.

    returns

    Returns an iterator of AlignmentRecords read from the stream.

    Definition Classes
    VCFOutFormatterOutFormatter
  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  17. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[VariantContext]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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