Object/Class

org.bdgenomics.adam.rdd

ADAMContext

Related Docs: class ADAMContext | package rdd

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object ADAMContext extends Serializable

This singleton provides an implicit conversion from a SparkContext to the ADAMContext, as well as implicit functions for the Pipe API.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  7. def equals(arg0: Any): Boolean

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  8. def finalize(): Unit

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  9. implicit def fragmentsToReadsConversionFn(fRdd: FragmentRDD, rdd: RDD[AlignmentRecord]): AlignmentRecordRDD

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  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. final def ne(arg0: AnyRef): Boolean

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  14. final def notify(): Unit

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  15. final def notifyAll(): Unit

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  16. implicit def rddToADAMRDD[T](rdd: RDD[T])(implicit ev1: (T) ⇒ IndexedRecord, ev2: Manifest[T]): ConcreteADAMRDDFunctions[T]

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  17. implicit def readsToVCConversionFn(arRdd: AlignmentRecordRDD, rdd: RDD[VariantContext]): VariantContextRDD

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  18. implicit def recordToRichRecord(record: AlignmentRecord): RichAlignmentRecord

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  19. implicit def sameTypeConversionFn[T, U <: GenomicRDD[T, U]](gRdd: U, rdd: RDD[T]): U

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  20. implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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  22. def toString(): String

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  23. final def wait(): Unit

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  24. final def wait(arg0: Long, arg1: Int): Unit

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  25. final def wait(arg0: Long): Unit

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