Object/Trait

org.hammerlab.genomics.loci.parsing

ParsedLoci

Related Docs: trait ParsedLoci | package parsing

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object ParsedLoci

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(lines: Iterator[String])(implicit factory: Factory): ParsedLoci

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  5. def apply(lociStrs: String)(implicit factory: Factory): ParsedLoci

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  6. final def asInstanceOf[T0]: T0

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  7. def clone(): AnyRef

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  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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  11. final def getClass(): Class[_]

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  12. def hashCode(): Int

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  13. final def isInstanceOf[T0]: Boolean

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  14. def loadFromPath(path: Path)(implicit factory: Factory): ParsedLoci

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    Parse loci from the specified file.

    Parse loci from the specified file.

    path

    path to file containing loci. If it ends in '.vcf' then it is read as a VCF and the variant sites are the loci. If it ends in '.loci' or '.txt' then it should be a file containing loci as "chrX:5-10,chr12-10-20", etc. Whitespace is ignored.

    returns

    parsed loci

  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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