Unmapped or MappedRead base read
Whether the read is earlier that the the mate read
Alignment location of the mate if it the mate is aligned
The base qualities, phred scaled.
The base qualities, phred scaled. These are numbers, and are NOT character encoded.
Whether the read failed predefined vendor checks for quality
Whether the read failed predefined vendor checks for quality
Is this read a duplicate of another?
Is this read a duplicate of another?
Whether the read is earlier that the the mate read
Is this read mapped?
Is this read mapped?
Whether read is from a paired-end library
Whether read is from a paired-end library
Alignment location of the mate if it the mate is aligned
Unmapped or MappedRead base read
The nucleotide sequence.
The nucleotide sequence.
PairedRead is a MappedRead or UnmappedRead with the additional mate information
UnmappedRead or MappedRead
Unmapped or MappedRead base read
Whether the read is earlier that the the mate read
Alignment location of the mate if it the mate is aligned