package
reads
Type Members
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case class
MappedRead(name: String, sequence: Bases, baseQualities: IndexedSeq[Byte], isDuplicate: Boolean, contigName: ContigName, alignmentQuality: Int, start: Locus, cigar: Cigar, failedVendorQualityChecks: Boolean, isPositiveStrand: Boolean, isPaired: Boolean) extends Read with Region with Product with Serializable
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case class
MateAlignmentProperties(contigName: ContigName, start: Locus, inferredInsertSize: Option[Int], isPositiveStrand: Boolean) extends Product with Serializable
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case class
PairedRead[+T <: Read](read: T, isFirstInPair: Boolean, mateAlignmentProperties: Option[MateAlignmentProperties]) extends Read with Product with Serializable
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trait
Read extends AnyRef
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class
Registrar extends KryoRegistrator
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case class
UnmappedRead(name: String, sequence: Bases, baseQualities: IndexedSeq[Byte], isDuplicate: Boolean, failedVendorQualityChecks: Boolean, isPaired: Boolean) extends Read with Product with Serializable
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Value Members
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object
Read extends Logging