Class/Object

org.hammerlab.bgzf.block

SeekableUncompressedBytes

Related Docs: object SeekableUncompressedBytes | package block

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case class SeekableUncompressedBytes(blockStream: SeekableStream) extends UncompressedBytesI[SeekableStream] with Product with Serializable

Seekable UncompressedBytesI

Linear Supertypes
Serializable, Serializable, Product, Equals, UncompressedBytesI[SeekableStream], Closeable, AutoCloseable, SimpleIterator[Byte], BufferedIterator[Byte], Iterator[Byte], TraversableOnce[Byte], GenTraversableOnce[Byte], AnyRef, Any
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Inherited
  1. SeekableUncompressedBytes
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. UncompressedBytesI
  7. Closeable
  8. AutoCloseable
  9. SimpleIterator
  10. BufferedIterator
  11. Iterator
  12. TraversableOnce
  13. GenTraversableOnce
  14. AnyRef
  15. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new SeekableUncompressedBytes(blockStream: SeekableStream)

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Type Members

  1. class GroupedIterator[B >: A] extends AbstractIterator[Seq[B]] with Iterator[Seq[B]]

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    Definition Classes
    Iterator

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. def ++[B >: Byte](that: ⇒ GenTraversableOnce[B]): Iterator[B]

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    Definition Classes
    Iterator
  4. def /:[B](z: B)(op: (B, Byte) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  5. def :\[B](z: B)(op: (Byte, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  6. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  7. def _advance: Option[Byte]

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    Attributes
    protected
    Definition Classes
    UncompressedBytesI → SimpleIterator
  8. def addString(b: StringBuilder): StringBuilder

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    Definition Classes
    TraversableOnce
  9. def addString(b: StringBuilder, sep: String): StringBuilder

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    Definition Classes
    TraversableOnce
  10. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

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    Definition Classes
    TraversableOnce
  11. def aggregate[B](z: ⇒ B)(seqop: (B, Byte) ⇒ B, combop: (B, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  12. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  13. val blockStream: SeekableStream

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  14. def buffered: SeekableUncompressedBytes.this.type

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    Definition Classes
    BufferedIterator → Iterator
  15. def clear(): Unit

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    Definition Classes
    SimpleIterator
  16. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  17. def close(): Unit

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    Definition Classes
    UncompressedBytesI → Closeable → AutoCloseable
  18. def collect[B](pf: PartialFunction[Byte, B]): Iterator[B]

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    Definition Classes
    Iterator
    Annotations
    @migration
    Migration

    (Changed in version 2.8.0) collect has changed. The previous behavior can be reproduced with toSeq.

  19. def collectFirst[B](pf: PartialFunction[Byte, B]): Option[B]

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    Definition Classes
    TraversableOnce
  20. def contains(elem: Any): Boolean

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    Definition Classes
    Iterator
  21. def copyToArray[B >: Byte](xs: Array[B], start: Int, len: Int): Unit

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  22. def copyToArray[B >: Byte](xs: Array[B]): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  23. def copyToArray[B >: Byte](xs: Array[B], start: Int): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  24. def copyToBuffer[B >: Byte](dest: Buffer[B]): Unit

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    Definition Classes
    TraversableOnce
  25. def corresponds[B](that: GenTraversableOnce[B])(p: (Byte, B) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator
  26. def count(p: (Byte) ⇒ Boolean): Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  27. def curBlock: Option[Block]

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    Definition Classes
    UncompressedBytesI
  28. def curPos: Option[Pos]

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    Definition Classes
    UncompressedBytesI
  29. def done(): Unit

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    Attributes
    protected
    Definition Classes
    SimpleIterator
  30. def drop(n: Int): Iterator[Byte]

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    Definition Classes
    Iterator
  31. def dropWhile(p: (Byte) ⇒ Boolean): Iterator[Byte]

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    Definition Classes
    Iterator
  32. def duplicate: (Iterator[Byte], Iterator[Byte])

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    Definition Classes
    Iterator
  33. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  34. def exists(p: (Byte) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  35. def filter(p: (Byte) ⇒ Boolean): Iterator[Byte]

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    Definition Classes
    Iterator
  36. def filterNot(p: (Byte) ⇒ Boolean): Iterator[Byte]

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    Definition Classes
    Iterator
  37. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  38. def find(p: (Byte) ⇒ Boolean): Option[Byte]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  39. def flatMap[B](f: (Byte) ⇒ GenTraversableOnce[B]): Iterator[B]

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    Definition Classes
    Iterator
  40. def fold[A1 >: Byte](z: A1)(op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  41. def foldLeft[B](z: B)(op: (B, Byte) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  42. def foldRight[B](z: B)(op: (Byte, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  43. def forall(p: (Byte) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  44. def foreach[U](f: (Byte) ⇒ U): Unit

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  45. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  46. def grouped[B >: Byte](size: Int): GroupedIterator[B]

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    Definition Classes
    Iterator
  47. def hasDefiniteSize: Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  48. final def hasNext: Boolean

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    Definition Classes
    SimpleIterator → Iterator
  49. final def head: Byte

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    Definition Classes
    SimpleIterator → BufferedIterator
  50. def indexOf[B >: Byte](elem: B): Int

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    Definition Classes
    Iterator
  51. def indexWhere(p: (Byte) ⇒ Boolean): Int

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    Definition Classes
    Iterator
  52. def isEmpty: Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  53. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  54. def isTraversableAgain: Boolean

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    Definition Classes
    Iterator → GenTraversableOnce
  55. def length: Int

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    Definition Classes
    Iterator
  56. def map[B](f: (Byte) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator
  57. def max[B >: Byte](implicit cmp: Ordering[B]): Byte

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  58. def maxBy[B](f: (Byte) ⇒ B)(implicit cmp: Ordering[B]): Byte

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  59. def min[B >: Byte](implicit cmp: Ordering[B]): Byte

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  60. def minBy[B](f: (Byte) ⇒ B)(implicit cmp: Ordering[B]): Byte

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  61. def mkString: String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  62. def mkString(sep: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  63. def mkString(start: String, sep: String, end: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  64. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  65. final def next(): Byte

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    Definition Classes
    SimpleIterator → Iterator
  66. def nonEmpty: Boolean

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  67. final def notify(): Unit

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    Definition Classes
    AnyRef
  68. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  69. def padTo[A1 >: Byte](len: Int, elem: A1): Iterator[A1]

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    Definition Classes
    Iterator
  70. def partition(p: (Byte) ⇒ Boolean): (Iterator[Byte], Iterator[Byte])

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    Definition Classes
    Iterator
  71. def patch[B >: Byte](from: Int, patchElems: Iterator[B], replaced: Int): Iterator[B]

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    Definition Classes
    Iterator
  72. def postNext(): Unit

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    Attributes
    protected
    Definition Classes
    SimpleIterator
  73. def product[B >: Byte](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  74. def reduce[A1 >: Byte](op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  75. def reduceLeft[B >: Byte](op: (B, Byte) ⇒ B): B

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    Definition Classes
    TraversableOnce
  76. def reduceLeftOption[B >: Byte](op: (B, Byte) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  77. def reduceOption[A1 >: Byte](op: (A1, A1) ⇒ A1): Option[A1]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  78. def reduceRight[B >: Byte](op: (Byte, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  79. def reduceRightOption[B >: Byte](op: (Byte, B) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  80. def reset(): Unit

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    Definition Classes
    UncompressedBytesI
  81. def reversed: List[Byte]

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    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  82. def sameElements(that: Iterator[_]): Boolean

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    Definition Classes
    Iterator
  83. def scanLeft[B](z: B)(op: (B, Byte) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator
  84. def scanRight[B](z: B)(op: (Byte, B) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator
  85. def seek(pos: Pos): Unit

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  86. def seq: Iterator[Byte]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  87. def size: Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  88. def slice(from: Int, until: Int): Iterator[Byte]

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    Definition Classes
    Iterator
  89. def sliding[B >: Byte](size: Int, step: Int): GroupedIterator[B]

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    Definition Classes
    Iterator
  90. def span(p: (Byte) ⇒ Boolean): (Iterator[Byte], Iterator[Byte])

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    Definition Classes
    Iterator
  91. def stopAt(pos: Pos): Unit

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    Definition Classes
    UncompressedBytesI
  92. def sum[B >: Byte](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  93. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  94. def take(n: Int): Iterator[Byte]

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    Definition Classes
    Iterator
  95. def takeWhile(p: (Byte) ⇒ Boolean): Iterator[Byte]

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    Definition Classes
    Iterator
  96. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, Byte, Col[Byte]]): Col[Byte]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  97. def toArray[B >: Byte](implicit arg0: ClassTag[B]): Array[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  98. def toBuffer[B >: Byte]: Buffer[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  99. def toIndexedSeq: IndexedSeq[Byte]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  100. def toIterable: Iterable[Byte]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  101. def toIterator: Iterator[Byte]

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    Definition Classes
    Iterator → GenTraversableOnce
  102. def toList: List[Byte]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  103. def toMap[T, U](implicit ev: <:<[Byte, (T, U)]): Map[T, U]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  104. def toSeq: Seq[Byte]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  105. def toSet[B >: Byte]: Set[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  106. def toStream: scala.collection.immutable.Stream[Byte]

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    Definition Classes
    Iterator → GenTraversableOnce
  107. def toString(): String

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    Definition Classes
    SimpleIterator → Iterator → AnyRef → Any
  108. def toTraversable: Traversable[Byte]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  109. def toVector: Vector[Byte]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  110. val uncompressedBytes: LevelingIterator[Byte, Block]

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    Definition Classes
    UncompressedBytesI
  111. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  112. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  113. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  114. def withFilter(p: (Byte) ⇒ Boolean): Iterator[Byte]

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    Definition Classes
    Iterator
  115. def zip[B](that: Iterator[B]): Iterator[(Byte, B)]

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    Definition Classes
    Iterator
  116. def zipAll[B, A1 >: Byte, B1 >: B](that: Iterator[B], thisElem: A1, thatElem: B1): Iterator[(A1, B1)]

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    Definition Classes
    Iterator
  117. def zipWithIndex: Iterator[(Byte, Int)]

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    Definition Classes
    Iterator

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Closeable

Inherited from AutoCloseable

Inherited from SimpleIterator[Byte]

Inherited from BufferedIterator[Byte]

Inherited from Iterator[Byte]

Inherited from TraversableOnce[Byte]

Inherited from GenTraversableOnce[Byte]

Inherited from AnyRef

Inherited from Any

Ungrouped