org.hammerlab.genomics.loci.set

LociSet

object LociSet extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. LociSet
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. def all(contigLengths: ContigLengths): LociSet

  7. def apply(ranges: ParsedLoci, contigLengths: ContigLengths): LociSet

  8. def apply(regions: Iterable[(ContigName, Locus, Locus)]): LociSet

  9. def apply(): LociSet

    An empty LociSet.

  10. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  11. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  15. def fromContigs(contigs: Iterator[Contig]): LociSet

  16. def fromContigs(contigs: Iterable[Contig]): LociSet

    These constructors build a LociSet directly from Contigs.

    These constructors build a LociSet directly from Contigs.

    They operate on an Iterator so that transformations to the data happen in one pass.

  17. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  18. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  19. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  20. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  21. final def notify(): Unit

    Definition Classes
    AnyRef

  22. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  23. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  24. def toString(): String

    Definition Classes
    AnyRef → Any

  25. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped