Class/Object

org.hammerlab.hadoop_bam

BAMInputFormat

Related Docs: object BAMInputFormat | package hadoop_bam

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class BAMInputFormat extends seqdoop.hadoop_bam.BAMInputFormat with Logging

Linear Supertypes
Logging, seqdoop.hadoop_bam.BAMInputFormat, FileInputFormat[LongWritable, SAMRecordWritable], InputFormat[LongWritable, SAMRecordWritable], AnyRef, Any
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Inherited
  1. BAMInputFormat
  2. Logging
  3. BAMInputFormat
  4. FileInputFormat
  5. InputFormat
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new BAMInputFormat()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def addInputPathRecursively(arg0: List[FileStatus], arg1: FileSystem, arg2: Path, arg3: PathFilter): Unit

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat
    Annotations
    @throws( classOf[java.io.IOException] )

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. def computeSplitSize(arg0: Long, arg1: Long, arg2: Long): Long

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat

  8. def createRecordReader(arg0: InputSplit, arg1: TaskAttemptContext): RecordReader[LongWritable, SAMRecordWritable]

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    Definition Classes
    BAMInputFormat → InputFormat
    Annotations
    @throws( classOf[java.io.IOException] ) @throws( ... )

  9. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  10. def debug(msg: ⇒ Any): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  13. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  14. def error(msg: ⇒ Any): Unit

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    Attributes
    protected
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    Logging

  15. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. def getBlockIndex(arg0: Array[BlockLocation], arg1: Long): Int

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat

  17. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  18. def getFormatMinSplitSize(): Long

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat

  19. def getSplits(splits: List[InputSplit], cfg: Configuration): List[InputSplit]

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    Definition Classes
    BAMInputFormat → BAMInputFormat

  20. def getSplits(arg0: JobContext): List[InputSplit]

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    Definition Classes
    BAMInputFormat → FileInputFormat → InputFormat
    Annotations
    @throws( classOf[java.io.IOException] )

  21. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  22. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  23. def info(msg: ⇒ Any): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  24. def isDebugEnabled: Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  25. def isErrorEnabled: Boolean

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    Attributes
    protected
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    Logging

  26. def isInfoEnabled: Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  27. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  28. def isSplitable(arg0: JobContext, arg1: Path): Boolean

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    Definition Classes
    BAMInputFormat → FileInputFormat

  29. def isTraceEnabled: Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  30. def isWarnEnabled: Boolean

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    Attributes
    protected
    Definition Classes
    Logging

  31. def listStatus(arg0: JobContext): List[FileStatus]

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat
    Annotations
    @throws( classOf[java.io.IOException] )

  32. def logger: Logger

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    Attributes
    protected
    Definition Classes
    Logging

  33. def loggerName: String

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    Attributes
    protected
    Definition Classes
    Logging

  34. def makeSplit(arg0: Path, arg1: Long, arg2: Long, arg3: Array[String], arg4: Array[String]): FileSplit

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat

  35. def makeSplit(arg0: Path, arg1: Long, arg2: Long, arg3: Array[String]): FileSplit

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    Attributes
    protected[org.apache.hadoop.mapreduce.lib.input]
    Definition Classes
    FileInputFormat

  36. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  37. final def notify(): Unit

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    Definition Classes
    AnyRef

  38. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  39. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  40. def toString(): String

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    Definition Classes
    AnyRef → Any

  41. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  42. def trace(msg: ⇒ Any): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  43. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  44. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  45. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  46. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit

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    Attributes
    protected
    Definition Classes
    Logging

  47. def warn(msg: ⇒ Any): Unit

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    Attributes
    protected
    Definition Classes
    Logging

Inherited from Logging

Inherited from seqdoop.hadoop_bam.BAMInputFormat

Inherited from FileInputFormat[LongWritable, SAMRecordWritable]

Inherited from InputFormat[LongWritable, SAMRecordWritable]

Inherited from AnyRef

Inherited from Any

Ungrouped