breeze.stats.distributions

MarkovChain

object MarkovChain

Provides methods for doing MCMC.

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  6. object Combinators

    Combinators for creating transition kernels from other kernels or things that are not quite transition kernels.

  7. object Kernels

    Provides Markov transition kernels for a few common MCMC techniques

  8. def apply[T](init: T)(resample: (T) ⇒ Rand[T]): Process[T]

    Given an initial state and an arbitrary Markov transition, return a sampler for doing mcmc

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  17. def metropolis[T](init: T, proposal: (T) ⇒ Rand[T])(logMeasure: (T) ⇒ Double): Process[T]

    Performs Metropolis distributions on a random variable.

    Performs Metropolis distributions on a random variable. Note this is not Metropolis-Hastings

    init

    The initial parameter

    proposal

    the symmetric proposal distribution generator

    logMeasure

    the distribution we want to sample from

  18. def metropolisHastings[T](init: T, proposal: (T) ⇒ Measure[T] with Rand[T])(logMeasure: (T) ⇒ Double): Process[T]

    Performs Metropolis-Hastings distributions on a random variable.

    Performs Metropolis-Hastings distributions on a random variable.

    init

    The initial parameter

    proposal

    the proposal distribution generator

    logMeasure

    the distribution we want to sample from

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  22. def slice(init: Double, logMeasure: (Double) ⇒ Double, valid: (Double) ⇒ Boolean): Process[Double]

    Creates a slice sampler for a function.

    Creates a slice sampler for a function. logMeasure should be an (unnormalized) log pdf.

    init

    guess

    logMeasure

    an unnormalized probability measure

    returns

    a slice sampler

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