Package ca.uhn.fhir.jpa.term

Class TermLoaderSvcImpl

java.lang.Object

ca.uhn.fhir.jpa.term.TermLoaderSvcImpl

All Implemented Interfaces:

ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

public class TermLoaderSvcImpl
extends Object
implements ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

Nested Class Summary

Nested classes/interfaces inherited from interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.ByteArrayFileDescriptor, ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor

Field Summary

Fields

Modifier and Type	Field	Description
static String	CUSTOM_CONCEPTS_FILE
static String	CUSTOM_HIERARCHY_FILE
static String	CUSTOM_PROPERTIES_FILE

Fields inherited from interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

ICD10CM_URI, IEEE_11073_10101_URI, IMGTHLA_URI, LOINC_URI, SCT_URI

Constructor Summary

Constructors

Constructor	Description
TermLoaderSvcImpl(ITermDeferredStorageSvc theDeferredStorageSvc, ITermCodeSystemStorageSvc theCodeSystemStorageSvc)

Method Summary

Modifier and Type	Method	Description
static String	firstNonBlank(String... theStrings)
protected LoincXmlFileZipContentsHandler	getLoincXmlFileZipContentsHandler()
static TermConcept	getOrCreateConcept(Map<String,TermConcept> id2concept, String id)
static TermConceptProperty	getOrCreateConceptProperty(Map<String,List<TermConceptProperty>> code2Properties, String code, String key)
static void	iterateOverZipFileCsv(LoadedFileDescriptors theDescriptors, String theFileNamePart, IZipContentsHandlerCsv theHandler, char theDelimiter, org.apache.commons.csv.QuoteMode theQuoteMode, boolean theIsPartialFilename)
static void	iterateOverZipFileCsvOptional(LoadedFileDescriptors theDescriptors, String theFileNamePart, IZipContentsHandlerCsv theHandler, char theDelimiter, org.apache.commons.csv.QuoteMode theQuoteMode, boolean theIsPartialFilename)
ca.uhn.fhir.jpa.term.UploadStatistics	loadCustom(String theSystem, List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
ca.uhn.fhir.jpa.term.UploadStatistics	loadDeltaAdd(String theSystem, List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
ca.uhn.fhir.jpa.term.UploadStatistics	loadDeltaRemove(String theSystem, List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
ca.uhn.fhir.jpa.term.UploadStatistics	loadIcd10cm(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
ca.uhn.fhir.jpa.term.UploadStatistics	loadImgthla(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
ca.uhn.fhir.jpa.term.UploadStatistics	loadLoinc(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
ca.uhn.fhir.jpa.term.UploadStatistics	loadSnomedCt(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles, ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)
static TermLoaderSvcImpl	withoutProxyCheck(ITermDeferredStorageSvc theTermDeferredStorageSvc, ITermCodeSystemStorageSvc theTermCodeSystemStorageSvc)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

CUSTOM_CONCEPTS_FILE

public static final String CUSTOM_CONCEPTS_FILE

See Also:

Constant Field Values

CUSTOM_HIERARCHY_FILE

public static final String CUSTOM_HIERARCHY_FILE

See Also:

Constant Field Values

CUSTOM_PROPERTIES_FILE

public static final String CUSTOM_PROPERTIES_FILE

See Also:

Constant Field Values

Constructor Details

TermLoaderSvcImpl

@Autowired
public TermLoaderSvcImpl(ITermDeferredStorageSvc theDeferredStorageSvc,
 ITermCodeSystemStorageSvc theCodeSystemStorageSvc)

Method Details

withoutProxyCheck

public static TermLoaderSvcImpl withoutProxyCheck(ITermDeferredStorageSvc theTermDeferredStorageSvc,
 ITermCodeSystemStorageSvc theTermCodeSystemStorageSvc)

loadImgthla

public ca.uhn.fhir.jpa.term.UploadStatistics loadImgthla(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadImgthla in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

loadLoinc

public ca.uhn.fhir.jpa.term.UploadStatistics loadLoinc(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadLoinc in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

loadSnomedCt

public ca.uhn.fhir.jpa.term.UploadStatistics loadSnomedCt(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadSnomedCt in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

loadIcd10cm

public ca.uhn.fhir.jpa.term.UploadStatistics loadIcd10cm(List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadIcd10cm in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

loadCustom

public ca.uhn.fhir.jpa.term.UploadStatistics loadCustom(String theSystem,
 List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadCustom in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

loadDeltaAdd

public ca.uhn.fhir.jpa.term.UploadStatistics loadDeltaAdd(String theSystem,
 List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadDeltaAdd in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

loadDeltaRemove

public ca.uhn.fhir.jpa.term.UploadStatistics loadDeltaRemove(String theSystem,
 List<ca.uhn.fhir.jpa.term.api.ITermLoaderSvc.FileDescriptor> theFiles,
 ca.uhn.fhir.rest.api.server.RequestDetails theRequestDetails)

Specified by:

loadDeltaRemove in interface ca.uhn.fhir.jpa.term.api.ITermLoaderSvc

getLoincXmlFileZipContentsHandler

protected LoincXmlFileZipContentsHandler getLoincXmlFileZipContentsHandler()

iterateOverZipFileCsv

public static void iterateOverZipFileCsv(LoadedFileDescriptors theDescriptors,
 String theFileNamePart,
 IZipContentsHandlerCsv theHandler,
 char theDelimiter,
 org.apache.commons.csv.QuoteMode theQuoteMode,
 boolean theIsPartialFilename)

iterateOverZipFileCsvOptional

public static void iterateOverZipFileCsvOptional(LoadedFileDescriptors theDescriptors,
 String theFileNamePart,
 IZipContentsHandlerCsv theHandler,
 char theDelimiter,
 org.apache.commons.csv.QuoteMode theQuoteMode,
 boolean theIsPartialFilename)

firstNonBlank

public static String firstNonBlank(String... theStrings)

getOrCreateConcept

public static TermConcept getOrCreateConcept(Map<String,TermConcept> id2concept,
 String id)

getOrCreateConceptProperty

public static TermConceptProperty getOrCreateConceptProperty(Map<String,List<TermConceptProperty>> code2Properties,
 String code,
 String key)