case class FastqRecord(name: String, bases: String, quals: String, comment: Option[String], readNumber: Option[Int]) extends Product with Serializable
Represents a record that can be read from or written to a fastq file.
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final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
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final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from FastqRecord to any2stringadd[FastqRecord] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
-
def
->[B](y: B): (FastqRecord, B)
- Implicit
- This member is added by an implicit conversion from FastqRecord to ArrowAssoc[FastqRecord] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
- Annotations
- @inline()
-
final
def
==(arg0: Any): Boolean
- Definition Classes
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final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val bases: String
-
def
clone(): AnyRef
- Attributes
- protected[java.lang]
- Definition Classes
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- Annotations
- @throws( ... )
- val comment: Option[String]
-
def
ensuring(cond: (FastqRecord) ⇒ Boolean, msg: ⇒ Any): FastqRecord
- Implicit
- This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: (FastqRecord) ⇒ Boolean): FastqRecord
- Implicit
- This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean, msg: ⇒ Any): FastqRecord
- Implicit
- This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): FastqRecord
- Implicit
- This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
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-
def
finalize(): Unit
- Attributes
- protected[java.lang]
- Definition Classes
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- Annotations
- @throws( classOf[java.lang.Throwable] )
-
def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from FastqRecord to StringFormat[FastqRecord] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
- Annotations
- @inline()
-
final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
-
def
header: String
Constructs the header line from the name, read number and comment.
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
-
def
length: Int
Returns the length of the sequence represented by this record.
- val name: String
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final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
final
def
notify(): Unit
- Definition Classes
- AnyRef
-
final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
- val quals: String
- val readNumber: Option[Int]
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
-
def
toString(): String
- Definition Classes
- FastqRecord → AnyRef → Any
-
def
trimmedTo(len: Int): FastqRecord
Trims the record to a given length.
Trims the record to a given length. If the record is already shorter than the length provided, returns a record at the current length.
- len
the length to trim to
- returns
a record with length <= len
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final
def
wait(): Unit
- Definition Classes
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- Annotations
- @throws( ... )
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final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
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- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
→[B](y: B): (FastqRecord, B)
- Implicit
- This member is added by an implicit conversion from FastqRecord to ArrowAssoc[FastqRecord] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc