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com.fulcrumgenomics.math

FishersExactTest

object FishersExactTest

Implementation of Fisher's Exact Test for 2x2 contingency tables. Follow's the implementation from R's "fisher.test".

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  15. def pValue(succ1: Int, fail1: Int, succ2: Int, fail2: Int, alternative: Alternative): Double

    Computes the 2-sided p-value of the Fisher's Exact Test on 2x2 contingency table.

    Computes the 2-sided p-value of the Fisher's Exact Test on 2x2 contingency table.

    succ1

    The number of successes in the test condition

    fail1

    The number of failures in the test condition

    succ2

    The number of successes under the null hypothesis

    fail2

    The number of failures under the null hypothesis

    alternative

    either TwoSided to test for any difference in proportion, Less to test if the test condition had a lower proportion of successes than the null, or Greater to test if the test condition had a higher proportion of successes than the null

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  21. object Alternative extends Enumeration

    The alternatives for p-value computation.

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