case class SampleBarcodeMetric(barcode_name: String = "", library_name: String = "", barcode: String = "", reads: Int = 0, pf_reads: Int = 0, perfect_matches: Int = 0, pf_perfect_matches: Int = 0, one_mismatch_matches: Int = 0, pf_one_mismatch_matches: Int = 0, pct_matches: Double = 0d, ratio_this_barcode_to_best_barcode_pct: Double = 0d, pf_pct_matches: Double = 0d, pf_ratio_this_barcode_to_best_barcode_pct: Double = 0d, pf_normalized_matches: Double = 0d) extends Metric with Product with Serializable
Metrics for matching reads to sample barcodes.
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- SampleBarcodeMetric
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Implicitly
- by any2stringadd
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Visibility
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Instance Constructors
- new SampleBarcodeMetric(barcode_name: String = "", library_name: String = "", barcode: String = "", reads: Int = 0, pf_reads: Int = 0, perfect_matches: Int = 0, pf_perfect_matches: Int = 0, one_mismatch_matches: Int = 0, pf_one_mismatch_matches: Int = 0, pct_matches: Double = 0d, ratio_this_barcode_to_best_barcode_pct: Double = 0d, pf_pct_matches: Double = 0d, pf_ratio_this_barcode_to_best_barcode_pct: Double = 0d, pf_normalized_matches: Double = 0d)
Value Members
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final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
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final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to any2stringadd[SampleBarcodeMetric] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
-
def
->[B](y: B): (SampleBarcodeMetric, B)
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to ArrowAssoc[SampleBarcodeMetric] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
- Annotations
- @inline()
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final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- var barcode: String
- var barcode_name: String
-
def
clone(): AnyRef
- Attributes
- protected[java.lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
ensuring(cond: (SampleBarcodeMetric) ⇒ Boolean, msg: ⇒ Any): SampleBarcodeMetric
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to Ensuring[SampleBarcodeMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: (SampleBarcodeMetric) ⇒ Boolean): SampleBarcodeMetric
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to Ensuring[SampleBarcodeMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean, msg: ⇒ Any): SampleBarcodeMetric
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to Ensuring[SampleBarcodeMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): SampleBarcodeMetric
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to Ensuring[SampleBarcodeMetric] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
def
finalize(): Unit
- Attributes
- protected[java.lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( classOf[java.lang.Throwable] )
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def
formatValues(value: Any): String
Override this method to customize how values are formatted.
Override this method to customize how values are formatted.
- Attributes
- protected
- Definition Classes
- Metric
-
def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to StringFormat[SampleBarcodeMetric] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
- Annotations
- @inline()
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final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
-
def
increment(numMismatches: Int, isPf: Boolean = true): Unit
Increments the counts for the metric.
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
- var library_name: String
-
def
names: Seq[String]
Get the names of the arguments in the order they were defined.
Get the names of the arguments in the order they were defined.
- Definition Classes
- Metric
-
final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
final
def
notify(): Unit
- Definition Classes
- AnyRef
-
final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
- var one_mismatch_matches: Int
- var pct_matches: Double
- var perfect_matches: Int
- var pf_normalized_matches: Double
- var pf_one_mismatch_matches: Int
- var pf_pct_matches: Double
- var pf_perfect_matches: Int
- var pf_ratio_this_barcode_to_best_barcode_pct: Double
- var pf_reads: Int
- var ratio_this_barcode_to_best_barcode_pct: Double
- var reads: Int
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
-
def
toString(): String
- Definition Classes
- Metric → AnyRef → Any
-
def
values: Seq[String]
Get the values of the arguments in the order they were defined.
Get the values of the arguments in the order they were defined.
- Definition Classes
- Metric
-
final
def
wait(): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
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final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
→[B](y: B): (SampleBarcodeMetric, B)
- Implicit
- This member is added by an implicit conversion from SampleBarcodeMetric to ArrowAssoc[SampleBarcodeMetric] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc