final class SamWriter extends Closeable with Writer[SamRecord] with HeaderHelper
Provides the ability to write SamRecords to an output Path.
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
- Definition Classes
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- def +(other: String): String
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def
++=[B <: SamRecord](items: TraversableOnce[B]): SamWriter.this.type
Writes an item and returns a reference to the writer.
Writes an item and returns a reference to the writer.
- Definition Classes
- Writer
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def
+=(item: SamRecord): SamWriter.this.type
Writes an item and returns a reference to the writer.
Writes an item and returns a reference to the writer.
- Definition Classes
- Writer
- def ->[B](y: B): (SamWriter, B)
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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def
close(): Unit
Closes the writer.
Closes the writer.
- Definition Classes
- SamWriter → Closeable → AutoCloseable
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def
dict: SAMSequenceDictionary
The sequence dictionary.
The sequence dictionary.
- Definition Classes
- HeaderHelper
- def ensuring(cond: (SamWriter) ⇒ Boolean, msg: ⇒ Any): SamWriter
- def ensuring(cond: (SamWriter) ⇒ Boolean): SamWriter
- def ensuring(cond: Boolean, msg: ⇒ Any): SamWriter
- def ensuring(cond: Boolean): SamWriter
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final
def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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- def formatted(fmtstr: String): String
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final
def
getClass(): Class[_]
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def
hashCode(): Int
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def
header: SAMFileHeader
The associated htsjdk.samtools.SAMFileHeader.
The associated htsjdk.samtools.SAMFileHeader.
- Definition Classes
- SamWriter → HeaderHelper
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final
def
isInstanceOf[T0]: Boolean
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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def
programGroups: Seq[SAMProgramRecord]
The list of program groups from the associated header.
The list of program groups from the associated header.
- Definition Classes
- HeaderHelper
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def
readGroups: Seq[SAMReadGroupRecord]
The list of read groups from the associated header.
The list of read groups from the associated header.
- Definition Classes
- HeaderHelper
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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def
write(rec: SamRecord): Unit
Writes an individual item.
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def
write[B <: SamRecord](items: TraversableOnce[B]): Unit
Writes out one or more items in order.
Writes out one or more items in order.
- Definition Classes
- Writer
- def →[B](y: B): (SamWriter, B)