case class BaseCounts(a: Int, c: Int, g: Int, t: Int, n: Int) extends Product with Serializable
Utility class to count the number of observation of each kind of base.
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final
def
!=(arg0: Any): Boolean
- Definition Classes
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final
def
##(): Int
- Definition Classes
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def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from BaseCounts to any2stringadd[BaseCounts] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
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def
->[B](y: B): (BaseCounts, B)
- Implicit
- This member is added by an implicit conversion from BaseCounts to ArrowAssoc[BaseCounts] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
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- @inline()
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final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- val a: Int
-
def
apply(ch: Char): Int
Returns the number of bases counted of the given base.
Returns the number of bases counted of the given base. Base must be in [acgtnACGTN].
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final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val c: Int
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def
clone(): AnyRef
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- protected[java.lang]
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- @throws( ... )
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def
ensuring(cond: (BaseCounts) ⇒ Boolean, msg: ⇒ Any): BaseCounts
- Implicit
- This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: (BaseCounts) ⇒ Boolean): BaseCounts
- Implicit
- This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean, msg: ⇒ Any): BaseCounts
- Implicit
- This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): BaseCounts
- Implicit
- This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
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def
finalize(): Unit
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- protected[java.lang]
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- @throws( classOf[java.lang.Throwable] )
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def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from BaseCounts to StringFormat[BaseCounts] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
- Annotations
- @inline()
- val g: Int
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final
def
getClass(): Class[_]
- Definition Classes
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
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- val n: Int
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final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
- Definition Classes
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
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- val t: Int
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final
def
wait(): Unit
- Definition Classes
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- @throws( ... )
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final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
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- @throws( ... )
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final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
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- @throws( ... )
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def
→[B](y: B): (BaseCounts, B)
- Implicit
- This member is added by an implicit conversion from BaseCounts to ArrowAssoc[BaseCounts] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc