case class Sample(sampleOrdinal: Int, sampleId: String, sampleName: String, libraryId: String, project: Option[String] = None, description: Option[String] = None, lane: Option[Int] = None, i7IndexBases: Option[String] = None, i5IndexBases: Option[String] = None, extendedAttributes: Map[String, String] = Map.empty) extends Product with Serializable
Represents information about a sample within an Illumina Experiment Manager sample sheet.
Optionally contains information about dual indexes: i7 and i5.
- sampleOrdinal
the sample ordinal if this sample belongs to a sample set.
- sampleId
the unique sample identifier.
- sampleName
the sample name.
- libraryId
the library identifier.
- project
the project identifier.
- description
the sample description.
- lane
the lane number for the sample.
- i7IndexBases
the sample barcode bases in the i7 read.
- i5IndexBases
the sample barcode bases in the i5 read.
- extendedAttributes
a map of non-standard or site-specific extended attributes. Keys should be upper-case.
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Instance Constructors
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new
Sample(sampleOrdinal: Int, sampleId: String, sampleName: String, libraryId: String, project: Option[String] = None, description: Option[String] = None, lane: Option[Int] = None, i7IndexBases: Option[String] = None, i5IndexBases: Option[String] = None, extendedAttributes: Map[String, String] = Map.empty)
- sampleOrdinal
the sample ordinal if this sample belongs to a sample set.
- sampleId
the unique sample identifier.
- sampleName
the sample name.
- libraryId
the library identifier.
- project
the project identifier.
- description
the sample description.
- lane
the lane number for the sample.
- i7IndexBases
the sample barcode bases in the i7 read.
- i5IndexBases
the sample barcode bases in the i5 read.
- extendedAttributes
a map of non-standard or site-specific extended attributes. Keys should be upper-case.
Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
- Definition Classes
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- def +(other: String): String
- def ->[B](y: B): (Sample, B)
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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- protected[java.lang]
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- @throws( ... )
- val description: Option[String]
- def ensuring(cond: (Sample) ⇒ Boolean, msg: ⇒ Any): Sample
- def ensuring(cond: (Sample) ⇒ Boolean): Sample
- def ensuring(cond: Boolean, msg: ⇒ Any): Sample
- def ensuring(cond: Boolean): Sample
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final
def
eq(arg0: AnyRef): Boolean
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def
extendedAttribute(name: String): Option[String]
Gets an extended attribute for the given column name.
Gets an extended attribute for the given column name. The column name can be any case.
- val extendedAttributes: Map[String, String]
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def
finalize(): Unit
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- @throws( classOf[java.lang.Throwable] )
- def formatted(fmtstr: String): String
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final
def
getClass(): Class[_]
- Definition Classes
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- val i5IndexBases: Option[String]
- val i7IndexBases: Option[String]
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
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- val lane: Option[Int]
- val libraryId: String
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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- val project: Option[String]
-
def
sampleBarcodeBases: Seq[Option[String]]
Returns the sample barcodes in order of sequencing.
- lazy val sampleBarcodeBytes: Array[Byte]
- lazy val sampleBarcodeString: String
- def sampleBarcodes: Seq[Option[String]]
- val sampleId: String
- val sampleName: String
- val sampleOrdinal: Int
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
- Definition Classes
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- @throws( ... )
- def →[B](y: B): (Sample, B)