class SamBuilder extends Iterable[SamRecord]
Class to create sets of SamRecords for testing.
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- FilterMonadic
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Instance Constructors
Type Members
-
type
Self = Iterable[SamRecord]
- Attributes
- protected[this]
- Definition Classes
- TraversableLike
-
class
WithFilter extends FilterMonadic[A, Repr]
- Definition Classes
- TraversableLike
Value Members
-
final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from SamBuilder to any2stringadd[SamBuilder] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
-
def
++[B >: SamRecord, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
++:[B >: SamRecord, That](that: Traversable[B])(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike
-
def
++:[B >: SamRecord, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike
-
def
++=(that: Iterable[SamRecord]): Unit
Adds all the records from another builder to this one.
-
def
->[B](y: B): (SamBuilder, B)
- Implicit
- This member is added by an implicit conversion from SamBuilder to ArrowAssoc[SamBuilder] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
- Annotations
- @inline()
-
def
/:[B](z: B)(op: (B, SamRecord) ⇒ B): B
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
:\[B](z: B)(op: (SamRecord, B) ⇒ B): B
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
def
addFrag(name: String = nextName, bases: String = randomBases, quals: String = defaultQuals, contig: Int = 0, start: Int = SAMRecord.NO_ALIGNMENT_START, unmapped: Boolean = false, cigar: String = readLength + "M", mapq: Int = 60, strand: Strand = Plus, attrs: Map[String, AnyRef] = Map.empty): Option[SamRecord]
Adds a non-paired read.
Adds a non-paired read. Returns an Option for convenience of calling map/foreach etc.
-
def
addPair(name: String = nextName, bases1: String = randomBases, bases2: String = randomBases, quals1: String = defaultQuals, quals2: String = defaultQuals, contig: Int = 0, start1: Int = SAMRecord.NO_ALIGNMENT_START, start2: Int = SAMRecord.NO_ALIGNMENT_START, unmapped1: Boolean = false, unmapped2: Boolean = false, cigar1: String = readLength + "M", cigar2: String = readLength + "M", mapq1: Int = 60, mapq2: Int = 60, strand1: Strand = Plus, strand2: Strand = Minus, attrs: Map[String, AnyRef] = Map.empty): Seq[SamRecord]
Adds a pair of reads to the file.
-
def
addString(b: StringBuilder): StringBuilder
- Definition Classes
- TraversableOnce
-
def
addString(b: StringBuilder, sep: String): StringBuilder
- Definition Classes
- TraversableOnce
-
def
addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
- Definition Classes
- TraversableOnce
-
def
aggregate[B](z: ⇒ B)(seqop: (B, SamRecord) ⇒ B, combop: (B, B) ⇒ B): B
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val baseQuality: Int
-
def
canEqual(that: Any): Boolean
- Definition Classes
- IterableLike → Equals
-
def
clone(): AnyRef
- Attributes
- protected[java.lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
collect[B, That](pf: PartialFunction[SamRecord, B])(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
collectFirst[B](pf: PartialFunction[SamRecord, B]): Option[B]
- Definition Classes
- TraversableOnce
-
def
companion: GenericCompanion[Iterable]
- Definition Classes
- Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate
-
def
copyToArray[B >: SamRecord](xs: Array[B], start: Int, len: Int): Unit
- Definition Classes
- IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
-
def
copyToArray[B >: SamRecord](xs: Array[B]): Unit
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
copyToArray[B >: SamRecord](xs: Array[B], start: Int): Unit
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
copyToBuffer[B >: SamRecord](dest: Buffer[B]): Unit
- Definition Classes
- TraversableOnce
-
def
count(p: (SamRecord) ⇒ Boolean): Int
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
val
defaultQuals: String
The default string of qualities to use.
The default string of qualities to use.
- Attributes
- protected
-
def
dict: SAMSequenceDictionary
Shorter accessor for the sequence dictionary.
-
def
drop(n: Int): Iterable[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → GenTraversableLike
-
def
dropRight(n: Int): Iterable[SamRecord]
- Definition Classes
- IterableLike
-
def
dropWhile(p: (SamRecord) ⇒ Boolean): Iterable[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
ensuring(cond: (SamBuilder) ⇒ Boolean, msg: ⇒ Any): SamBuilder
- Implicit
- This member is added by an implicit conversion from SamBuilder to Ensuring[SamBuilder] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: (SamBuilder) ⇒ Boolean): SamBuilder
- Implicit
- This member is added by an implicit conversion from SamBuilder to Ensuring[SamBuilder] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean, msg: ⇒ Any): SamBuilder
- Implicit
- This member is added by an implicit conversion from SamBuilder to Ensuring[SamBuilder] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): SamBuilder
- Implicit
- This member is added by an implicit conversion from SamBuilder to Ensuring[SamBuilder] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
def
equals(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
def
exists(p: (SamRecord) ⇒ Boolean): Boolean
- Definition Classes
- IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
-
def
filter(p: (SamRecord) ⇒ Boolean): Iterable[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
filterNot(p: (SamRecord) ⇒ Boolean): Iterable[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
finalize(): Unit
- Attributes
- protected[java.lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( classOf[java.lang.Throwable] )
-
def
find(p: (SamRecord) ⇒ Boolean): Option[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
-
def
flatMap[B, That](f: (SamRecord) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike → FilterMonadic
-
def
flatten[B](implicit asTraversable: (SamRecord) ⇒ GenTraversableOnce[B]): Iterable[B]
- Definition Classes
- GenericTraversableTemplate
-
def
fold[A1 >: SamRecord](z: A1)(op: (A1, A1) ⇒ A1): A1
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
foldLeft[B](z: B)(op: (B, SamRecord) ⇒ B): B
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
foldRight[B](z: B)(op: (SamRecord, B) ⇒ B): B
- Definition Classes
- IterableLike → TraversableOnce → GenTraversableOnce
-
def
forall(p: (SamRecord) ⇒ Boolean): Boolean
- Definition Classes
- IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
-
def
foreach[U](f: (SamRecord) ⇒ U): Unit
- Definition Classes
- IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic
-
def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from SamBuilder to StringFormat[SamBuilder] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
- Annotations
- @inline()
-
def
genericBuilder[B]: Builder[B, Iterable[B]]
- Definition Classes
- GenericTraversableTemplate
-
final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
-
def
groupBy[K](f: (SamRecord) ⇒ K): Map[K, Iterable[SamRecord]]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
grouped(size: Int): Iterator[Iterable[SamRecord]]
- Definition Classes
- IterableLike
-
def
hasDefiniteSize: Boolean
- Definition Classes
- TraversableLike → TraversableOnce → GenTraversableOnce
-
def
hashCode(): Int
- Definition Classes
- AnyRef → Any
-
def
head: SamRecord
- Definition Classes
- IterableLike → TraversableLike → GenTraversableLike
-
def
headOption: Option[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
- val header: SAMFileHeader
-
def
init: Iterable[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
inits: Iterator[Iterable[SamRecord]]
- Definition Classes
- TraversableLike
-
def
isEmpty: Boolean
- Definition Classes
- IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
-
final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
-
final
def
isTraversableAgain: Boolean
- Definition Classes
- TraversableLike → GenTraversableLike → GenTraversableOnce
-
def
iterator: Iterator[SamRecord]
Returns an iterator over the records that have been built.
Returns an iterator over the records that have been built.
- Definition Classes
- SamBuilder → IterableLike → GenIterableLike
-
def
last: SamRecord
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
lastOption: Option[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
map[B, That](f: (SamRecord) ⇒ B)(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike → FilterMonadic
-
def
max[B >: SamRecord](implicit cmp: Ordering[B]): SamRecord
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
maxBy[B](f: (SamRecord) ⇒ B)(implicit cmp: Ordering[B]): SamRecord
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
min[B >: SamRecord](implicit cmp: Ordering[B]): SamRecord
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
minBy[B](f: (SamRecord) ⇒ B)(implicit cmp: Ordering[B]): SamRecord
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
mkString: String
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
mkString(sep: String): String
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
mkString(start: String, sep: String, end: String): String
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
def
newBuilder: Builder[SamRecord, Iterable[SamRecord]]
- Attributes
- protected[this]
- Definition Classes
- GenericTraversableTemplate → HasNewBuilder
-
def
nextName: String
Generate a sequential name.
Generate a sequential name.
- Attributes
- protected
-
def
nonEmpty: Boolean
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
final
def
notify(): Unit
- Definition Classes
- AnyRef
-
final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
-
def
par: ParIterable[SamRecord]
- Definition Classes
- Parallelizable
-
def
parCombiner: Combiner[SamRecord, ParIterable[SamRecord]]
- Attributes
- protected[this]
- Definition Classes
- TraversableLike → Parallelizable
-
def
partition(p: (SamRecord) ⇒ Boolean): (Iterable[SamRecord], Iterable[SamRecord])
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
product[B >: SamRecord](implicit num: Numeric[B]): B
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
randomBases: String
Generate a random sequence of bases of length readLength.
Generate a random sequence of bases of length readLength.
- Attributes
- protected
- val readGroupId: Option[String]
- val readLength: Int
-
def
reduce[A1 >: SamRecord](op: (A1, A1) ⇒ A1): A1
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
reduceLeft[B >: SamRecord](op: (B, SamRecord) ⇒ B): B
- Definition Classes
- TraversableOnce
-
def
reduceLeftOption[B >: SamRecord](op: (B, SamRecord) ⇒ B): Option[B]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
reduceOption[A1 >: SamRecord](op: (A1, A1) ⇒ A1): Option[A1]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
reduceRight[B >: SamRecord](op: (SamRecord, B) ⇒ B): B
- Definition Classes
- IterableLike → TraversableOnce → GenTraversableOnce
-
def
reduceRightOption[B >: SamRecord](op: (SamRecord, B) ⇒ B): Option[B]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
repr: Iterable[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
reversed: List[SamRecord]
- Attributes
- protected[this]
- Definition Classes
- TraversableOnce
- val rg: SAMReadGroupRecord
-
def
sameElements[B >: SamRecord](that: GenIterable[B]): Boolean
- Definition Classes
- IterableLike → GenIterableLike
-
def
scan[B >: SamRecord, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
scanLeft[B, That](z: B)(op: (B, SamRecord) ⇒ B)(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
scanRight[B, That](z: B)(op: (SamRecord, B) ⇒ B)(implicit bf: CanBuildFrom[Iterable[SamRecord], B, That]): That
- Definition Classes
- TraversableLike → GenTraversableLike
- Annotations
- @migration
- Migration
(Changed in version 2.9.0) The behavior of
scanRight
has changed. The previous behavior can be reproduced with scanRight.reverse.
-
def
seq: Iterable[SamRecord]
- Definition Classes
- Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
-
def
size: Int
Returns the number of records that have been built.
Returns the number of records that have been built.
- Definition Classes
- SamBuilder → GenTraversableLike → TraversableOnce → GenTraversableOnce
-
def
sizeHintIfCheap: Int
- Attributes
- protected[scala.collection]
- Definition Classes
- GenTraversableOnce
-
def
slice(from: Int, until: Int): Iterable[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → GenTraversableLike
-
def
sliding(size: Int, step: Int): Iterator[Iterable[SamRecord]]
- Definition Classes
- IterableLike
-
def
sliding(size: Int): Iterator[Iterable[SamRecord]]
- Definition Classes
- IterableLike
- val sort: Option[SamOrder]
-
def
span(p: (SamRecord) ⇒ Boolean): (Iterable[SamRecord], Iterable[SamRecord])
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
splitAt(n: Int): (Iterable[SamRecord], Iterable[SamRecord])
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
stringPrefix: String
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
sum[B >: SamRecord](implicit num: Numeric[B]): B
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
-
def
tail: Iterable[SamRecord]
- Definition Classes
- TraversableLike → GenTraversableLike
-
def
tails: Iterator[Iterable[SamRecord]]
- Definition Classes
- TraversableLike
-
def
take(n: Int): Iterable[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → GenTraversableLike
-
def
takeRight(n: Int): Iterable[SamRecord]
- Definition Classes
- IterableLike
-
def
takeWhile(p: (SamRecord) ⇒ Boolean): Iterable[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → GenTraversableLike
-
def
thisCollection: Iterable[SamRecord]
- Attributes
- protected[this]
- Definition Classes
- IterableLike → TraversableLike
-
def
to[Col[_]](implicit cbf: CanBuildFrom[Nothing, SamRecord, Col[SamRecord]]): Col[SamRecord]
- Definition Classes
- TraversableLike → TraversableOnce → GenTraversableOnce
-
def
toArray[B >: SamRecord](implicit arg0: ClassTag[B]): Array[B]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toBuffer[B >: SamRecord]: Buffer[B]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toCollection(repr: Iterable[SamRecord]): Iterable[SamRecord]
- Attributes
- protected[this]
- Definition Classes
- IterableLike → TraversableLike
-
def
toIndexedSeq: IndexedSeq[SamRecord]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toIterable: Iterable[SamRecord]
- Definition Classes
- IterableLike → TraversableOnce → GenTraversableOnce
-
def
toIterator: Iterator[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → GenTraversableOnce
- Annotations
- @deprecatedOverriding( ... , "2.11.0" )
-
def
toList: List[SamRecord]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toMap[T, U](implicit ev: <:<[SamRecord, (T, U)]): Map[T, U]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toParArray: ParArray[T]
- Implicit
- This member is added by an implicit conversion from SamBuilder to CollectionsHaveToParArray[SamBuilder, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (SamBuilder) ⇒ GenTraversableOnce[T] is in scope.
- Definition Classes
- CollectionsHaveToParArray
-
def
toSeq: Seq[SamRecord]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toSet[B >: SamRecord]: Set[B]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
toSource: SamSource
Creates a SamReader over the records stored in a temporary file.
-
def
toStream: Stream[SamRecord]
- Definition Classes
- IterableLike → TraversableLike → GenTraversableOnce
-
def
toString(): String
- Definition Classes
- TraversableLike → Any
-
def
toTempFile(deleteOnExit: Boolean = true): FgBioDef.PathToBam
Writes the contents to a temporary file that will be deleted when the JVM exits.
-
def
toTraversable: Traversable[SamRecord]
- Definition Classes
- TraversableLike → TraversableOnce → GenTraversableOnce
- Annotations
- @deprecatedOverriding( ... , "2.11.0" )
-
def
toVector: Vector[SamRecord]
- Definition Classes
- TraversableOnce → GenTraversableOnce
-
def
transpose[B](implicit asTraversable: (SamRecord) ⇒ GenTraversableOnce[B]): Iterable[Iterable[B]]
- Definition Classes
- GenericTraversableTemplate
- Annotations
- @migration
- Migration
(Changed in version 2.9.0)
transpose
throws anIllegalArgumentException
if collections are not uniformly sized.
-
def
unzip[A1, A2](implicit asPair: (SamRecord) ⇒ (A1, A2)): (Iterable[A1], Iterable[A2])
- Definition Classes
- GenericTraversableTemplate
-
def
unzip3[A1, A2, A3](implicit asTriple: (SamRecord) ⇒ (A1, A2, A3)): (Iterable[A1], Iterable[A2], Iterable[A3])
- Definition Classes
- GenericTraversableTemplate
-
def
view(from: Int, until: Int): IterableView[SamRecord, Iterable[SamRecord]]
- Definition Classes
- IterableLike → TraversableLike
-
def
view: IterableView[SamRecord, Iterable[SamRecord]]
- Definition Classes
- IterableLike → TraversableLike
-
final
def
wait(): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
withFilter(p: (SamRecord) ⇒ Boolean): FilterMonadic[SamRecord, Iterable[SamRecord]]
- Definition Classes
- TraversableLike → FilterMonadic
-
def
write(path: FgBioDef.PathToBam): Unit
Writes the contents of the record set to the provided file path.
-
def
zip[A1 >: SamRecord, B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Iterable[SamRecord], (A1, B), That]): That
- Definition Classes
- IterableLike → GenIterableLike
-
def
zipAll[B, A1 >: SamRecord, That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Iterable[SamRecord], (A1, B), That]): That
- Definition Classes
- IterableLike → GenIterableLike
-
def
zipWithIndex[A1 >: SamRecord, That](implicit bf: CanBuildFrom[Iterable[SamRecord], (A1, Int), That]): That
- Definition Classes
- IterableLike → GenIterableLike
-
def
→[B](y: B): (SamBuilder, B)
- Implicit
- This member is added by an implicit conversion from SamBuilder to ArrowAssoc[SamBuilder] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
Shadowed Implicit Value Members
-
def
filter(p: (SamRecord) ⇒ Boolean): TraversableOnce[SamRecord]
- Implicit
- This member is added by an implicit conversion from SamBuilder to MonadOps[SamRecord] performed by method MonadOps in scala.collection.TraversableOnce.
- Shadowing
- This implicitly inherited member is shadowed by one or more members in this class.
To access this member you can use a type ascription:(samBuilder: MonadOps[SamRecord]).filter(p)
- Definition Classes
- MonadOps
-
def
flatMap[B](f: (SamRecord) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
- Implicit
- This member is added by an implicit conversion from SamBuilder to MonadOps[SamRecord] performed by method MonadOps in scala.collection.TraversableOnce.
- Shadowing
- This implicitly inherited member is shadowed by one or more members in this class.
To access this member you can use a type ascription:(samBuilder: MonadOps[SamRecord]).flatMap(f)
- Definition Classes
- MonadOps
-
def
map[B](f: (SamRecord) ⇒ B): TraversableOnce[B]
- Implicit
- This member is added by an implicit conversion from SamBuilder to MonadOps[SamRecord] performed by method MonadOps in scala.collection.TraversableOnce.
- Shadowing
- This implicitly inherited member is shadowed by one or more members in this class.
To access this member you can use a type ascription:(samBuilder: MonadOps[SamRecord]).map(f)
- Definition Classes
- MonadOps
-
def
withFilter(p: (SamRecord) ⇒ Boolean): Iterator[SamRecord]
- Implicit
- This member is added by an implicit conversion from SamBuilder to MonadOps[SamRecord] performed by method MonadOps in scala.collection.TraversableOnce.
- Shadowing
- This implicitly inherited member is shadowed by one or more members in this class.
To access this member you can use a type ascription:(samBuilder: MonadOps[SamRecord]).withFilter(p)
- Definition Classes
- MonadOps