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1.  final def !=(arg0: Any): Boolean

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2.  final def ##(): Int

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3.  final def ==(arg0: Any): Boolean

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4.  val DefaultDemuxMetricsFileName: String

   The name of the metrics file if none is given by the user.

5.  val UnmatchedSampleId: String

   The name of the sample for unmatched reads.

6.  final def asInstanceOf[T0]: T0

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7.  def clone(): AnyRef

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8.  def demultiplexingIterator(sources: Seq[FastqSource], demultiplexer: FastqDemultiplexer, threads: Int, batchSize: Int = DemuxBatchRecordsSize): Iterator[DemuxResult]

   Creates a demultiplexing iterator that performs demultiplexing in parallel.

   Creates a demultiplexing iterator that performs demultiplexing in parallel.

   sources

   the FASTQ sources, one per read.

   demultiplexer

   the demultiplexer to use. The demultiplexer's FastqDemultiplexer.demultiplex() method expects the same number of reads as sources.

9.  final def eq(arg0: AnyRef): Boolean

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10.  def equals(arg0: Any): Boolean

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11.  def finalize(): Unit

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12.  final def getClass(): Class[_]

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13.  def hashCode(): Int

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14.  final def isInstanceOf[T0]: Boolean

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15.  final def ne(arg0: AnyRef): Boolean

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16.  final def notify(): Unit

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17.  final def notifyAll(): Unit

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18.  final def synchronized[T0](arg0: ⇒ T0): T0

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19.  def toString(): String

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20.  final def wait(): Unit

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21.  final def wait(arg0: Long, arg1: Int): Unit

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22.  final def wait(arg0: Long): Unit

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