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com.fulcrumgenomics.umi

ConsensusTags

object ConsensusTags

Object that encapsulates the various consensus related tags that are added to consensus reads at both the per-read and per-base level.

Currently only contains tags for single-strand consensus reads, but with a view to using the following names for consistency if/when we add duplex calling: Value AB BA Final

== == ===== per-read-depth aD bD cD per-read-min-depth aM bM cM per-read-error-rate aE bE cE per-base-depth ad bd cd per-base-error-count ae be ce per-base-bases ac bc bases per-base-quals aq bq quals The second letter in the tag is lower case if it is per-base, upper case if it is per-read.
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  4. val MolecularId: String

    Post-grouping ID that is file-wide unique per source molecule.

  5. val OriginalUmiBases: String

    The field in which the original UMI bases are stored post-correction.

  6. val UmiBases: String

    The default field in which to look for UMI sequences.

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  23. object PerBase
  24. object PerRead

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