case class DeletionEntry(rec: SamRecord, offset: Int) extends PileupEntry with Product with Serializable
Pileup entry representing a deletion.
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from DeletionEntry to any2stringadd[DeletionEntry] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
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def
->[B](y: B): (DeletionEntry, B)
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- This member is added by an implicit conversion from DeletionEntry to ArrowAssoc[DeletionEntry] performed by method ArrowAssoc in scala.Predef.
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final
def
==(arg0: Any): Boolean
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def
clone(): AnyRef
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def
ensuring(cond: (DeletionEntry) ⇒ Boolean, msg: ⇒ Any): DeletionEntry
- Implicit
- This member is added by an implicit conversion from DeletionEntry to Ensuring[DeletionEntry] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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def
ensuring(cond: (DeletionEntry) ⇒ Boolean): DeletionEntry
- Implicit
- This member is added by an implicit conversion from DeletionEntry to Ensuring[DeletionEntry] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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def
ensuring(cond: Boolean, msg: ⇒ Any): DeletionEntry
- Implicit
- This member is added by an implicit conversion from DeletionEntry to Ensuring[DeletionEntry] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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def
ensuring(cond: Boolean): DeletionEntry
- Implicit
- This member is added by an implicit conversion from DeletionEntry to Ensuring[DeletionEntry] performed by method Ensuring in scala.Predef.
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final
def
eq(arg0: AnyRef): Boolean
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def
finalize(): Unit
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def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from DeletionEntry to StringFormat[DeletionEntry] performed by method StringFormat in scala.Predef.
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final
def
getClass(): Class[_]
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notify(): Unit
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final
def
notifyAll(): Unit
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val
offset: Int
The zero-based offset within the com.fulcrumgenomics.bam.api.SamRecord that is represented.
The zero-based offset within the com.fulcrumgenomics.bam.api.SamRecord that is represented. For matches and mismatches this is the offset of the base in question. For deletions it is the base prior to the deleted sequence. For insertions it is the first inserted base in the read.
- Definition Classes
- DeletionEntry → PileupEntry
-
val
rec: SamRecord
The SamRecord that the pileup entry represents.
The SamRecord that the pileup entry represents.
- Definition Classes
- DeletionEntry → PileupEntry
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
wait(): Unit
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def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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def
→[B](y: B): (DeletionEntry, B)
- Implicit
- This member is added by an implicit conversion from DeletionEntry to ArrowAssoc[DeletionEntry] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc