Packages

case class GenomicRange(refName: String, start: Int, end: Int) extends Product with Serializable

Stores information about the coordinates of the alternate locus

refName

the name of the reference sequence (or chromosome)

start

position of the genomic range (1-based)

end

position of the gneomic range (1-based inclusive).

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. GenomicRange
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new GenomicRange(refName: String, start: Int, end: Int)

    refName

    the name of the reference sequence (or chromosome)

    start

    position of the genomic range (1-based)

    end

    position of the gneomic range (1-based inclusive).

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from GenomicRange to any2stringadd[GenomicRange] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (GenomicRange, B)
    Implicit
    This member is added by an implicit conversion from GenomicRange to ArrowAssoc[GenomicRange] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  6. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  7. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  8. val end: Int
  9. def ensuring(cond: (GenomicRange) ⇒ Boolean, msg: ⇒ Any): GenomicRange
    Implicit
    This member is added by an implicit conversion from GenomicRange to Ensuring[GenomicRange] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  10. def ensuring(cond: (GenomicRange) ⇒ Boolean): GenomicRange
    Implicit
    This member is added by an implicit conversion from GenomicRange to Ensuring[GenomicRange] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  11. def ensuring(cond: Boolean, msg: ⇒ Any): GenomicRange
    Implicit
    This member is added by an implicit conversion from GenomicRange to Ensuring[GenomicRange] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  12. def ensuring(cond: Boolean): GenomicRange
    Implicit
    This member is added by an implicit conversion from GenomicRange to Ensuring[GenomicRange] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  13. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  14. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  15. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from GenomicRange to StringFormat[GenomicRange] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  16. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  17. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  18. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  19. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  20. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  21. val refName: String
  22. val start: Int
  23. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  24. def toString(): String
    Definition Classes
    GenomicRange → AnyRef → Any
  25. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  28. def →[B](y: B): (GenomicRange, B)
    Implicit
    This member is added by an implicit conversion from GenomicRange to ArrowAssoc[GenomicRange] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from GenomicRange to any2stringadd[GenomicRange]

Inherited by implicit conversion StringFormat from GenomicRange to StringFormat[GenomicRange]

Inherited by implicit conversion Ensuring from GenomicRange to Ensuring[GenomicRange]

Inherited by implicit conversion ArrowAssoc from GenomicRange to ArrowAssoc[GenomicRange]

Ungrouped