case class ErrorRateByReadPositionMetric(read_number: Int, position: Int, bases_total: Count, errors: Count, error_rate: Double, a_to_c_error_rate: Double, a_to_g_error_rate: Double, a_to_t_error_rate: Double, c_to_a_error_rate: Double, c_to_g_error_rate: Double, c_to_t_error_rate: Double, g_to_a_error_rate: Option[Double] = None, g_to_c_error_rate: Option[Double] = None, g_to_t_error_rate: Option[Double] = None, t_to_a_error_rate: Option[Double] = None, t_to_c_error_rate: Option[Double] = None, t_to_g_error_rate: Option[Double] = None, collapsed: Boolean = true) extends Metric with Product with Serializable

Metrics produced by ErrorRateByReadPosition describing the number of base observations and substitution errors at each position within each sequencing read. Error rates are given for the overall substitution error rate and also for each kind of substitution separately.

If collapsed is true, then complementary substitutions are grouped together into the first 6 error rates. e.g. T>G substitutions are reported as A>C. Otherwise, all 12 substitution rates are reported.

read_number

The read number (0 for fragments, 1 for first of pair, 2 for second of pair).

position

The position or cycle within the read (1-based).

bases_total

The total number of bases observed at this position.

errors

The total number of errors or non-reference basecalls observed at this position.

error_rate

The overall error rate at position.

a_to_c_error_rate

The rate of A>C (and T>G when collapsed) errors at the position.

a_to_g_error_rate

The rate of A>G (and T>C when collapsed) errors at the position.

a_to_t_error_rate

The rate of A>T (and T>A when collapsed) errors at the position.

c_to_a_error_rate

The rate of C>A (and G>T when collapsed) errors at the position.

c_to_g_error_rate

The rate of C>G (and G>C when collapsed) errors at the position.

c_to_t_error_rate

The rate of C>T (and G>A when collapsed) errors at the position.

g_to_a_error_rate

The rate of G>A errors at the position.

g_to_c_error_rate

The rate of G>C errors at the position.

g_to_t_error_rate

The rate of G>T errors at the position.

t_to_a_error_rate

The rate of T>A errors at the position.

t_to_c_error_rate

The rate of T>C errors at the position.

t_to_g_error_rate

The rate of T>T errors at the position.

Linear Supertypes
Serializable, Serializable, Metric, Iterable[(String, String)], IterableLike[(String, String), Iterable[(String, String)]], GenIterable[(String, String)], GenIterableLike[(String, String), Iterable[(String, String)]], Traversable[(String, String)], GenTraversable[(String, String)], GenericTraversableTemplate[(String, String), Iterable], TraversableLike[(String, String), Iterable[(String, String)]], GenTraversableLike[(String, String), Iterable[(String, String)]], Parallelizable[(String, String), ParIterable[(String, String)]], TraversableOnce[(String, String)], GenTraversableOnce[(String, String)], FilterMonadic[(String, String), Iterable[(String, String)]], HasNewBuilder[(String, String), Iterable[(String, String)] @scala.annotation.unchecked.uncheckedVariance], Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. ErrorRateByReadPositionMetric
  2. Serializable
  3. Serializable
  4. Metric
  5. Iterable
  6. IterableLike
  7. GenIterable
  8. GenIterableLike
  9. Traversable
  10. GenTraversable
  11. GenericTraversableTemplate
  12. TraversableLike
  13. GenTraversableLike
  14. Parallelizable
  15. TraversableOnce
  16. GenTraversableOnce
  17. FilterMonadic
  18. HasNewBuilder
  19. Product
  20. Equals
  21. AnyRef
  22. Any
Implicitly
  1. by CollectionsHaveToParArray
  2. by MonadOps
  3. by any2stringadd
  4. by StringFormat
  5. by Ensuring
  6. by ArrowAssoc
  7. by alternateImplicit
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new ErrorRateByReadPositionMetric(read_number: Int, position: Int, bases_total: Count, errors: Count, error_rate: Double, a_to_c_error_rate: Double, a_to_g_error_rate: Double, a_to_t_error_rate: Double, c_to_a_error_rate: Double, c_to_g_error_rate: Double, c_to_t_error_rate: Double, g_to_a_error_rate: Option[Double] = None, g_to_c_error_rate: Option[Double] = None, g_to_t_error_rate: Option[Double] = None, t_to_a_error_rate: Option[Double] = None, t_to_c_error_rate: Option[Double] = None, t_to_g_error_rate: Option[Double] = None, collapsed: Boolean = true)

    read_number

    The read number (0 for fragments, 1 for first of pair, 2 for second of pair).

    position

    The position or cycle within the read (1-based).

    bases_total

    The total number of bases observed at this position.

    errors

    The total number of errors or non-reference basecalls observed at this position.

    error_rate

    The overall error rate at position.

    a_to_c_error_rate

    The rate of A>C (and T>G when collapsed) errors at the position.

    a_to_g_error_rate

    The rate of A>G (and T>C when collapsed) errors at the position.

    a_to_t_error_rate

    The rate of A>T (and T>A when collapsed) errors at the position.

    c_to_a_error_rate

    The rate of C>A (and G>T when collapsed) errors at the position.

    c_to_g_error_rate

    The rate of C>G (and G>C when collapsed) errors at the position.

    c_to_t_error_rate

    The rate of C>T (and G>A when collapsed) errors at the position.

    g_to_a_error_rate

    The rate of G>A errors at the position.

    g_to_c_error_rate

    The rate of G>C errors at the position.

    g_to_t_error_rate

    The rate of G>T errors at the position.

    t_to_a_error_rate

    The rate of T>A errors at the position.

    t_to_c_error_rate

    The rate of T>C errors at the position.

    t_to_g_error_rate

    The rate of T>T errors at the position.

Type Members

  1. type Self = Iterable[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  2. class WithFilter extends FilterMonadic[A, Repr]
    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to any2stringadd[ErrorRateByReadPositionMetric] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ++[B >: (String, String), That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  5. def ++:[B >: (String, String), That](that: Traversable[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike
  6. def ++:[B >: (String, String), That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike
  7. def ->[B](y: B): (ErrorRateByReadPositionMetric, B)
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to ArrowAssoc[ErrorRateByReadPositionMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  8. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. val a_to_c_error_rate: Double
  10. val a_to_g_error_rate: Double
  11. val a_to_t_error_rate: Double
  12. def addString(b: StringBuilder): StringBuilder
    Definition Classes
    TraversableOnce
  13. def addString(b: StringBuilder, sep: String): StringBuilder
    Definition Classes
    TraversableOnce
  14. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
    Definition Classes
    TraversableOnce
  15. def aggregate[B](z: ⇒ B)(seqop: (B, (String, String)) ⇒ B, combop: (B, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  16. def apply(name: String): String

    Gets the value of the field by name.

    Gets the value of the field by name.

    Definition Classes
    Metric
  17. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  18. val bases_total: Count
  19. val c_to_a_error_rate: Double
  20. val c_to_g_error_rate: Double
  21. val c_to_t_error_rate: Double
  22. def canEqual(that: Any): Boolean
    Definition Classes
    IterableLike → Equals
  23. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  24. val collapsed: Boolean
  25. def collect[B, That](pf: PartialFunction[(String, String), B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  26. def collectFirst[B](pf: PartialFunction[(String, String), B]): Option[B]
    Definition Classes
    TraversableOnce
  27. def companion: GenericCompanion[Iterable]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate
  28. def copyToArray[B >: (String, String)](xs: Array[B], start: Int, len: Int): Unit
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  29. def copyToArray[B >: (String, String)](xs: Array[B]): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  30. def copyToArray[B >: (String, String)](xs: Array[B], start: Int): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  31. def copyToBuffer[B >: (String, String)](dest: Buffer[B]): Unit
    Definition Classes
    TraversableOnce
  32. def count(p: ((String, String)) ⇒ Boolean): Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  33. def drop(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  34. def dropRight(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike
  35. def dropWhile(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  36. def ensuring(cond: (ErrorRateByReadPositionMetric) ⇒ Boolean, msg: ⇒ Any): ErrorRateByReadPositionMetric
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to Ensuring[ErrorRateByReadPositionMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  37. def ensuring(cond: (ErrorRateByReadPositionMetric) ⇒ Boolean): ErrorRateByReadPositionMetric
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to Ensuring[ErrorRateByReadPositionMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  38. def ensuring(cond: Boolean, msg: ⇒ Any): ErrorRateByReadPositionMetric
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to Ensuring[ErrorRateByReadPositionMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  39. def ensuring(cond: Boolean): ErrorRateByReadPositionMetric
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to Ensuring[ErrorRateByReadPositionMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  40. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  41. val error_rate: Double
  42. val errors: Count
  43. def exists(p: ((String, String)) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  44. def filter(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  45. def filterNot(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  46. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  47. def find(p: ((String, String)) ⇒ Boolean): Option[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  48. def flatMap[B, That](f: ((String, String)) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  49. def flatten[B](implicit asTraversable: ((String, String)) ⇒ GenTraversableOnce[B]): Iterable[B]
    Definition Classes
    GenericTraversableTemplate
  50. def fold[A1 >: (String, String)](z: A1)(op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  51. def foldLeft[B](z: B)(op: (B, (String, String)) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  52. def foldRight[B](z: B)(op: ((String, String), B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  53. def forall(p: ((String, String)) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  54. def foreach[U](f: ((String, String)) ⇒ U): Unit
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic
  55. def formatValue(value: Any): String

    Override this method to customize how values are formatted.

    Override this method to customize how values are formatted.

    Attributes
    protected
    Definition Classes
    Metric
  56. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to StringFormat[ErrorRateByReadPositionMetric] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  57. val g_to_a_error_rate: Option[Double]
  58. val g_to_c_error_rate: Option[Double]
  59. val g_to_t_error_rate: Option[Double]
  60. def genericBuilder[B]: Builder[B, Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
  61. def get(name: String): Option[String]

    Gets the value of the field by name, returns None if it does not exist.

    Gets the value of the field by name, returns None if it does not exist.

    Definition Classes
    Metric
  62. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  63. def groupBy[K](f: ((String, String)) ⇒ K): Map[K, Iterable[(String, String)]]
    Definition Classes
    TraversableLike → GenTraversableLike
  64. def grouped(size: Int): Iterator[Iterable[(String, String)]]
    Definition Classes
    IterableLike
  65. def hasDefiniteSize: Boolean
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  66. def head: (String, String)
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  67. def headOption: Option[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  68. def init: Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  69. def inits: Iterator[Iterable[(String, String)]]
    Definition Classes
    TraversableLike
  70. def isEmpty: Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  71. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  72. final def isTraversableAgain: Boolean
    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce
  73. def iterator: Iterator[(String, String)]

    Gets an iterator over the fields of this metric in the order they were defined.

    Gets an iterator over the fields of this metric in the order they were defined. Returns tuples of names and values

    Definition Classes
    Metric → IterableLike → GenIterableLike
  74. def last: (String, String)
    Definition Classes
    TraversableLike → GenTraversableLike
  75. def lastOption: Option[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  76. def map[B, That](f: ((String, String)) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  77. def max[B >: (String, String)](implicit cmp: Ordering[B]): (String, String)
    Definition Classes
    TraversableOnce → GenTraversableOnce
  78. def maxBy[B](f: ((String, String)) ⇒ B)(implicit cmp: Ordering[B]): (String, String)
    Definition Classes
    TraversableOnce → GenTraversableOnce
  79. def min[B >: (String, String)](implicit cmp: Ordering[B]): (String, String)
    Definition Classes
    TraversableOnce → GenTraversableOnce
  80. def minBy[B](f: ((String, String)) ⇒ B)(implicit cmp: Ordering[B]): (String, String)
    Definition Classes
    TraversableOnce → GenTraversableOnce
  81. def mkString: String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  82. def mkString(sep: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  83. def mkString(start: String, sep: String, end: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  84. def names: Seq[String]

    Get the names of the arguments in the order they were defined.

    Get the names of the arguments in the order they were defined.

    Definition Classes
    Metric
  85. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  86. def newBuilder: Builder[(String, String), Iterable[(String, String)]]
    Attributes
    protected[this]
    Definition Classes
    GenericTraversableTemplate → HasNewBuilder
  87. def nonEmpty: Boolean
    Definition Classes
    TraversableOnce → GenTraversableOnce
  88. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  89. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  90. def par: ParIterable[(String, String)]
    Definition Classes
    Parallelizable
  91. def parCombiner: Combiner[(String, String), ParIterable[(String, String)]]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike → Parallelizable
  92. def partition(p: ((String, String)) ⇒ Boolean): (Iterable[(String, String)], Iterable[(String, String)])
    Definition Classes
    TraversableLike → GenTraversableLike
  93. val position: Int
  94. def product[B >: (String, String)](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  95. val read_number: Int
  96. def reduce[A1 >: (String, String)](op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  97. def reduceLeft[B >: (String, String)](op: (B, (String, String)) ⇒ B): B
    Definition Classes
    TraversableOnce
  98. def reduceLeftOption[B >: (String, String)](op: (B, (String, String)) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  99. def reduceOption[A1 >: (String, String)](op: (A1, A1) ⇒ A1): Option[A1]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  100. def reduceRight[B >: (String, String)](op: ((String, String), B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  101. def reduceRightOption[B >: (String, String)](op: ((String, String), B) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  102. def repr: Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  103. def reversed: List[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  104. def sameElements[B >: (String, String)](that: GenIterable[B]): Boolean
    Definition Classes
    IterableLike → GenIterableLike
  105. def scan[B >: (String, String), That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  106. def scanLeft[B, That](z: B)(op: (B, (String, String)) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  107. def scanRight[B, That](z: B)(op: ((String, String), B) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  108. def seq: Iterable[(String, String)]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  109. def size: Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  110. def sizeHintIfCheap: Int
    Attributes
    protected[collection]
    Definition Classes
    GenTraversableOnce
  111. def slice(from: Int, until: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  112. def sliding(size: Int, step: Int): Iterator[Iterable[(String, String)]]
    Definition Classes
    IterableLike
  113. def sliding(size: Int): Iterator[Iterable[(String, String)]]
    Definition Classes
    IterableLike
  114. def span(p: ((String, String)) ⇒ Boolean): (Iterable[(String, String)], Iterable[(String, String)])
    Definition Classes
    TraversableLike → GenTraversableLike
  115. def splitAt(n: Int): (Iterable[(String, String)], Iterable[(String, String)])
    Definition Classes
    TraversableLike → GenTraversableLike
  116. def stringPrefix: String
    Definition Classes
    TraversableLike → GenTraversableLike
  117. def sum[B >: (String, String)](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  118. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  119. val t_to_a_error_rate: Option[Double]
  120. val t_to_c_error_rate: Option[Double]
  121. val t_to_g_error_rate: Option[Double]
  122. def tail: Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  123. def tails: Iterator[Iterable[(String, String)]]
    Definition Classes
    TraversableLike
  124. def take(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  125. def takeRight(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike
  126. def takeWhile(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  127. def thisCollection: Iterable[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  128. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, (String, String), Col[(String, String)]]): Col[(String, String)]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  129. def toArray[B >: (String, String)](implicit arg0: ClassTag[B]): Array[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  130. def toBuffer[B >: (String, String)]: Buffer[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  131. def toCollection(repr: Iterable[(String, String)]): Iterable[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  132. def toIndexedSeq: IndexedSeq[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  133. def toIterable: Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  134. def toIterator: Iterator[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  135. def toList: List[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  136. def toMap[T, U](implicit ev: <:<[(String, String), (T, U)]): Map[T, U]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  137. def toParArray: ParArray[T]
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to CollectionsHaveToParArray[ErrorRateByReadPositionMetric, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (ErrorRateByReadPositionMetric) ⇒ GenTraversableOnce[T] is in scope.
    Definition Classes
    CollectionsHaveToParArray
  138. def toSeq: Seq[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  139. def toSet[B >: (String, String)]: Set[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  140. def toStream: Stream[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
  141. def toString(): String
    Definition Classes
    Metric → TraversableLike → AnyRef → Any
  142. def toTraversable: Traversable[(String, String)]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  143. def toVector: Vector[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  144. def transpose[B](implicit asTraversable: ((String, String)) ⇒ GenTraversableOnce[B]): Iterable[Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  145. def unzip[A1, A2](implicit asPair: ((String, String)) ⇒ (A1, A2)): (Iterable[A1], Iterable[A2])
    Definition Classes
    GenericTraversableTemplate
  146. def unzip3[A1, A2, A3](implicit asTriple: ((String, String)) ⇒ (A1, A2, A3)): (Iterable[A1], Iterable[A2], Iterable[A3])
    Definition Classes
    GenericTraversableTemplate
  147. def values: Seq[String]

    Get the values of the arguments in the order they were defined.

    Get the values of the arguments in the order they were defined.

    Definition Classes
    Metric
  148. def view(from: Int, until: Int): IterableView[(String, String), Iterable[(String, String)]]
    Definition Classes
    IterableLike → TraversableLike
  149. def view: IterableView[(String, String), Iterable[(String, String)]]
    Definition Classes
    IterableLike → TraversableLike
  150. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  151. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  152. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  153. def withFilter(p: ((String, String)) ⇒ Boolean): FilterMonadic[(String, String), Iterable[(String, String)]]
    Definition Classes
    TraversableLike → FilterMonadic
  154. def zip[A1 >: (String, String), B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  155. def zipAll[B, A1 >: (String, String), That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  156. def zipWithIndex[A1 >: (String, String), That](implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, Int), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  157. def [B](y: B): (ErrorRateByReadPositionMetric, B)
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to ArrowAssoc[ErrorRateByReadPositionMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Shadowed Implicit Value Members

  1. def filter(p: ((String, String)) ⇒ Boolean): TraversableOnce[(String, String)]
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (errorRateByReadPositionMetric: MonadOps[(String, String)]).filter(p)
    Definition Classes
    MonadOps
  2. def flatMap[B](f: ((String, String)) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (errorRateByReadPositionMetric: MonadOps[(String, String)]).flatMap(f)
    Definition Classes
    MonadOps
  3. def map[B](f: ((String, String)) ⇒ B): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (errorRateByReadPositionMetric: MonadOps[(String, String)]).map(f)
    Definition Classes
    MonadOps
  4. def withFilter(p: ((String, String)) ⇒ Boolean): Iterator[(String, String)]
    Implicit
    This member is added by an implicit conversion from ErrorRateByReadPositionMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (errorRateByReadPositionMetric: MonadOps[(String, String)]).withFilter(p)
    Definition Classes
    MonadOps

Deprecated Value Members

  1. def /:[B](z: B)(op: (B, (String, String)) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
    Annotations
    @deprecated
    Deprecated

    (Since version 2.12.10) Use foldLeft instead of /:

  2. def :\[B](z: B)(op: ((String, String), B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
    Annotations
    @deprecated
    Deprecated

    (Since version 2.12.10) Use foldRight instead of :\

  3. def formatValues(value: Any): String

    Attributes
    protected
    Definition Classes
    Metric
    Annotations
    @deprecated
    Deprecated

    (Since version 0.5.0) Use formatValue instead.

Inherited from Serializable

Inherited from Serializable

Inherited from Metric

Inherited from Iterable[(String, String)]

Inherited from IterableLike[(String, String), Iterable[(String, String)]]

Inherited from GenIterable[(String, String)]

Inherited from GenIterableLike[(String, String), Iterable[(String, String)]]

Inherited from Traversable[(String, String)]

Inherited from GenTraversable[(String, String)]

Inherited from GenericTraversableTemplate[(String, String), Iterable]

Inherited from TraversableLike[(String, String), Iterable[(String, String)]]

Inherited from GenTraversableLike[(String, String), Iterable[(String, String)]]

Inherited from Parallelizable[(String, String), ParIterable[(String, String)]]

Inherited from TraversableOnce[(String, String)]

Inherited from GenTraversableOnce[(String, String)]

Inherited from FilterMonadic[(String, String), Iterable[(String, String)]]

Inherited from HasNewBuilder[(String, String), Iterable[(String, String)] @scala.annotation.unchecked.uncheckedVariance]

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion CollectionsHaveToParArray from ErrorRateByReadPositionMetric to CollectionsHaveToParArray[ErrorRateByReadPositionMetric, T]

Inherited by implicit conversion MonadOps from ErrorRateByReadPositionMetric to MonadOps[(String, String)]

Inherited by implicit conversion any2stringadd from ErrorRateByReadPositionMetric to any2stringadd[ErrorRateByReadPositionMetric]

Inherited by implicit conversion StringFormat from ErrorRateByReadPositionMetric to StringFormat[ErrorRateByReadPositionMetric]

Inherited by implicit conversion Ensuring from ErrorRateByReadPositionMetric to Ensuring[ErrorRateByReadPositionMetric]

Inherited by implicit conversion ArrowAssoc from ErrorRateByReadPositionMetric to ArrowAssoc[ErrorRateByReadPositionMetric]

Inherited by implicit conversion alternateImplicit from ErrorRateByReadPositionMetric to ForceImplicitAmbiguity

Ungrouped