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java.lang.Object htsjdk.samtools.SecondaryOrSupplementarySkippingIterator
public class SecondaryOrSupplementarySkippingIterator
Wrapper around SAMRecord iterator that skips over secondary and supplementary elements. This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to handle those concerns separately. This class should be viewed as a replacement for NotPrimarySkippingIterator, in that we did not want to change the functionality of NPSI to no longer match its name
Constructor Summary | |
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SecondaryOrSupplementarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)
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Method Summary | |
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boolean |
advance()
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SAMRecord |
getCurrent()
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boolean |
hasCurrent()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SecondaryOrSupplementarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)
Method Detail |
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public boolean hasCurrent()
public SAMRecord getCurrent()
public boolean advance()
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