htsjdk.samtools.cram.encoding
Class ExternalByteArrayEncoding

java.lang.Object
  htsjdk.samtools.cram.encoding.ExternalByteArrayEncoding

All Implemented Interfaces:

Encoding<byte[]>

public class ExternalByteArrayEncoding
extends java.lang.Object
implements Encoding<byte[]>

Field Summary

int	contentId
static EncodingID	encodingId

Constructor Summary

ExternalByteArrayEncoding()

Method Summary

BitCodec<byte[]>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int contentId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

encodingId

public static final EncodingID encodingId

contentId

public int contentId

Constructor Detail

ExternalByteArrayEncoding

public ExternalByteArrayEncoding()

Method Detail

toParam

public static EncodingParams toParam(int contentId)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<byte[]>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<byte[]>

buildCodec

public BitCodec<byte[]> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                   java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<byte[]>

id

public EncodingID id()

Specified by:

id in interface Encoding<byte[]>