htsjdk.samtools.cram.encoding
Class SubexpIntegerEncoding

java.lang.Object
  htsjdk.samtools.cram.encoding.SubexpIntegerEncoding

All Implemented Interfaces:

Encoding<java.lang.Integer>

public class SubexpIntegerEncoding
extends java.lang.Object
implements Encoding<java.lang.Integer>

Field Summary

static EncodingID

ENCODING_ID

Constructor Summary

SubexpIntegerEncoding()

SubexpIntegerEncoding(int k)

SubexpIntegerEncoding(int offset, int k)

Method Summary

BitCodec<java.lang.Integer>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int offset, int k)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ENCODING_ID

public static final EncodingID ENCODING_ID

Constructor Detail

SubexpIntegerEncoding

public SubexpIntegerEncoding()

SubexpIntegerEncoding

public SubexpIntegerEncoding(int k)

SubexpIntegerEncoding

public SubexpIntegerEncoding(int offset,
                             int k)

Method Detail

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Integer>

toParam

public static EncodingParams toParam(int offset,
                                     int k)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Integer>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Integer>

buildCodec

public BitCodec<java.lang.Integer> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                              java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Integer>