htsjdk.samtools.cram.encoding.reader
Class DataReaderFactory

java.lang.Object
  htsjdk.samtools.cram.encoding.reader.DataReaderFactory

public class DataReaderFactory
extends java.lang.Object

Nested Class Summary

static class

DataReaderFactory.DataReaderWithStats<T>

Constructor Summary

DataReaderFactory()

Method Summary

AbstractReader	buildReader(AbstractReader reader, BitInputStream bis, java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, CompressionHeader h, int refId)
java.util.Map<java.lang.String,DataReaderFactory.DataReaderWithStats>	getStats(CramRecordReader reader)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataReaderFactory

public DataReaderFactory()

Method Detail

buildReader

public AbstractReader buildReader(AbstractReader reader,
                                  BitInputStream bis,
                                  java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                  CompressionHeader h,
                                  int refId)
                           throws java.lang.IllegalArgumentException,
                                  java.lang.IllegalAccessException

Throws:

java.lang.IllegalArgumentException

java.lang.IllegalAccessException

getStats

public java.util.Map<java.lang.String,DataReaderFactory.DataReaderWithStats> getStats(CramRecordReader reader)
                                                                               throws java.lang.IllegalArgumentException,
                                                                                      java.lang.IllegalAccessException

Throws:

java.lang.IllegalArgumentException

java.lang.IllegalAccessException