htsjdk.samtools.cram.structure
Class Block

java.lang.Object
  htsjdk.samtools.cram.structure.Block

Direct Known Subclasses:

CompressionHeaderBLock

public class Block
extends java.lang.Object

Field Summary

int	contentId
BlockContentType	contentType
BlockCompressionMethod	method

Constructor Summary

Block()

Block(BlockCompressionMethod method, BlockContentType contentType, int contentId, byte[] rawContent, byte[] compressedContent)

Block(java.io.InputStream is, boolean readContent, boolean uncompress)

Method Summary

void	compress()
byte[]	getCompressedContent()
byte[]	getRawContent()
int	getRawContentSize()
boolean	isCompressed()
boolean	isUncompressed()
void	setCompressedContent(byte[] compressed)
void	setRawContent(byte[] raw)
java.lang.String	toString()
void	uncompress()
void	write(java.io.OutputStream os)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

method

public BlockCompressionMethod method

contentType

public BlockContentType contentType

contentId

public int contentId

Constructor Detail

Block

public Block()

Block

public Block(BlockCompressionMethod method,
             BlockContentType contentType,
             int contentId,
             byte[] rawContent,
             byte[] compressedContent)

Block

public Block(java.io.InputStream is,
             boolean readContent,
             boolean uncompress)
      throws java.io.IOException

Throws:

java.io.IOException

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

isCompressed

public boolean isCompressed()

isUncompressed

public boolean isUncompressed()

setRawContent

public void setRawContent(byte[] raw)

getRawContent

public byte[] getRawContent()

getRawContentSize

public int getRawContentSize()

setCompressedContent

public void setCompressedContent(byte[] compressed)

getCompressedContent

public byte[] getCompressedContent()

compress

public void compress()

uncompress

public void uncompress()

write

public void write(java.io.OutputStream os)
           throws java.io.IOException

Throws:

java.io.IOException