htsjdk.tribble
Class TribbleException

java.lang.Object
  java.lang.Throwable
      java.lang.Exception
          java.lang.RuntimeException
              htsjdk.tribble.TribbleException

All Implemented Interfaces:

java.io.Serializable

Direct Known Subclasses:

TribbleException.FeatureFileDoesntExist, TribbleException.InternalCodecException, TribbleException.InvalidDecodeLine, TribbleException.InvalidHeader, TribbleException.MalformedFeatureFile, TribbleException.TabixReaderFailure, TribbleException.UnableToCreateCorrectIndexType, TribbleException.UnableToReadIndexFile

public class TribbleException
extends java.lang.RuntimeException

See Also:

Serialized Form

Nested Class Summary

static class	TribbleException.FeatureFileDoesntExist
static class	TribbleException.InternalCodecException
static class	TribbleException.InvalidDecodeLine
static class	TribbleException.InvalidHeader
static class	TribbleException.MalformedFeatureFile
static class	TribbleException.TabixReaderFailure
static class	TribbleException.UnableToCreateCorrectIndexType
static class	TribbleException.UnableToReadIndexFile

Constructor Summary

TribbleException(java.lang.String msg)

TribbleException(java.lang.String message, java.lang.Throwable throwable)

Method Summary

java.lang.String	getMessage() override the default message with ours, which attaches the source file in question
void	setSource(java.lang.String source) set the source for the file; where we got lines from

Methods inherited from class java.lang.Throwable

fillInStackTrace, getCause, getLocalizedMessage, getStackTrace, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

TribbleException

public TribbleException(java.lang.String msg)

TribbleException

public TribbleException(java.lang.String message,
                        java.lang.Throwable throwable)

Method Detail

setSource

public void setSource(java.lang.String source)

set the source for the file; where we got lines from

Parameters:

source - the source location, usually a file though it could be a http link or other source

getMessage

public java.lang.String getMessage()

override the default message with ours, which attaches the source file in question

Overrides:

getMessage in class java.lang.Throwable

Returns:

a string with our internal error, along with the causitive source file (or other input source)