public interface SAMRecordFactory
Modifier and Type | Method and Description |
---|---|
BAMRecord |
createBAMRecord(SAMFileHeader header,
int referenceSequenceIndex,
int alignmentStart,
short readNameLength,
short mappingQuality,
int indexingBin,
int cigarLen,
int flags,
int readLen,
int mateReferenceSequenceIndex,
int mateAlignmentStart,
int insertSize,
byte[] variableLengthBlock)
Create a new BAM Record.
|
SAMRecord |
createSAMRecord(SAMFileHeader header)
Create a new SAMRecord to be filled in
|
SAMRecord createSAMRecord(SAMFileHeader header)
BAMRecord createBAMRecord(SAMFileHeader header, int referenceSequenceIndex, int alignmentStart, short readNameLength, short mappingQuality, int indexingBin, int cigarLen, int flags, int readLen, int mateReferenceSequenceIndex, int mateAlignmentStart, int insertSize, byte[] variableLengthBlock)