htsjdk.samtools

Class SamReader.Type

java.lang.Object

htsjdk.samtools.SamReader.Type

Enclosing interface:

SamReader

public abstract static class SamReader.Type
extends java.lang.Object

Describes a type of SAM file.

Field Summary

Fields

Modifier and Type	Field and Description
static SamReader.Type	BAM_TYPE
static SamReader.Type	CRAM_TYPE
static SamReader.Type	SAM_TYPE

Constructor Summary

Constructors

Constructor and Description
SamReader.Type()

Method Summary

Methods

Modifier and Type	Method and Description
abstract java.lang.String	fileExtension() The recommended file extension for SAMs of this type, without a period.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CRAM_TYPE

public static SamReader.Type CRAM_TYPE

BAM_TYPE

public static SamReader.Type BAM_TYPE

SAM_TYPE

public static SamReader.Type SAM_TYPE

Constructor Detail

SamReader.Type

public SamReader.Type()

Method Detail

fileExtension

public abstract java.lang.String fileExtension()

The recommended file extension for SAMs of this type, without a period.