htsjdk.samtools.seekablestream

Class SeekableHTTPStream

java.lang.Object

java.io.InputStream

htsjdk.samtools.seekablestream.SeekableStream

htsjdk.samtools.seekablestream.SeekableHTTPStream

All Implemented Interfaces:

java.io.Closeable, java.lang.AutoCloseable

public class SeekableHTTPStream
extends SeekableStream

Constructor Summary

Constructors

Constructor and Description
SeekableHTTPStream(java.net.URL url)
SeekableHTTPStream(java.net.URL url, java.net.Proxy proxy)

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
boolean	eof()
java.lang.String	getSource()
long	length()
long	position()
int	read()
int	read(byte[] buffer, int offset, int len)
void	seek(long position)
long	skip(long n)

Methods inherited from class htsjdk.samtools.seekablestream.SeekableStream

readFully

Methods inherited from class java.io.InputStream

available, mark, markSupported, read, reset

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SeekableHTTPStream

public SeekableHTTPStream(java.net.URL url)

SeekableHTTPStream

public SeekableHTTPStream(java.net.URL url,
                  java.net.Proxy proxy)

Method Detail

position

public long position()

Specified by:

position in class SeekableStream

length

public long length()

Specified by:

length in class SeekableStream

skip

public long skip(long n)
          throws java.io.IOException

Overrides:

skip in class java.io.InputStream

Throws:

java.io.IOException

eof

public boolean eof()
            throws java.io.IOException

Specified by:

eof in class SeekableStream

Throws:

java.io.IOException

seek

public void seek(long position)

Specified by:

seek in class SeekableStream

read

public int read(byte[] buffer,
       int offset,
       int len)
         throws java.io.IOException

Specified by:

read in class SeekableStream

Throws:

java.io.IOException

close

public void close()
           throws java.io.IOException

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable

Specified by:

close in class SeekableStream

Throws:

java.io.IOException

read

public int read()
         throws java.io.IOException

Specified by:

read in class java.io.InputStream

Throws:

java.io.IOException

getSource

public java.lang.String getSource()

Specified by:

getSource in class SeekableStream

Returns:

String representation of source (e.g. URL, file path, etc.), or null if not available.