public abstract class AbstractSAMHeaderRecord
extends java.lang.Object
implements java.io.Serializable
Modifier and Type | Field and Description |
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static long |
serialVersionUID |
Constructor and Description |
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AbstractSAMHeaderRecord() |
Modifier and Type | Method and Description |
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protected boolean |
attributesEqual(AbstractSAMHeaderRecord that)
For use in the equals() method of the concrete class.
|
protected int |
attributesHashCode()
For use in the hashCode() method of the concrete class.
|
java.lang.String |
getAttribute(java.lang.String key) |
java.util.Set<java.util.Map.Entry<java.lang.String,java.lang.String>> |
getAttributes()
Returns the Set of attributes.
|
java.lang.String |
getId()
Returns the ID tag (or equivalent) for this header record.
|
abstract java.lang.String |
getSAMString()
Returns the record in the SAM line-based text format.
|
void |
setAttribute(java.lang.String key,
java.lang.Object value)
Deprecated.
Use {@link #setAttribute(String, String) instead
|
void |
setAttribute(java.lang.String key,
java.lang.String value)
Set the given value for the attribute named 'key'.
|
java.lang.String |
toString()
Simple to String that outputs the concrete class name and the set of attributes stored.
|
public static final long serialVersionUID
public java.lang.String getAttribute(java.lang.String key)
@Deprecated public void setAttribute(java.lang.String key, java.lang.Object value)
key
- attribute namevalue
- attribute valuepublic void setAttribute(java.lang.String key, java.lang.String value)
key
- attribute namevalue
- attribute valuepublic java.util.Set<java.util.Map.Entry<java.lang.String,java.lang.String>> getAttributes()
public java.lang.String getId()
protected boolean attributesEqual(AbstractSAMHeaderRecord that)
protected int attributesHashCode()
public java.lang.String toString()
toString
in class java.lang.Object
public abstract java.lang.String getSAMString()