Interface | Description |
---|---|
CloseableTribbleIterator<T extends Feature> |
The basic iterator we use in Tribble, which allows closing and basic iteration.
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Feature |
Marker interface for Locatables with Tribble support.
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FeatureCodec<FEATURE_TYPE extends Feature,SOURCE> |
The base interface for classes that read in features.
|
FeatureReader<T extends Feature> |
the basic interface that feature sources need to match
|
NameAwareCodec |
Created by IntelliJ IDEA.
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Class | Description |
---|---|
AbstractFeatureCodec<FEATURE_TYPE extends Feature,SOURCE> |
Simple basic class providing much of the basic functionality of codecs
Every concrete subclass must implement
FeatureCodec.canDecode(String) to indicate whether it can decode the file. |
AbstractFeatureReader<T extends Feature,SOURCE> |
jrobinso
the feature reader class, which uses indices and codecs to read in Tribble file formats.
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AbstractFeatureReader.ComponentMethods | |
AsciiFeatureCodec<T extends Feature> |
A convenience base class for codecs that want to read in features from ASCII lines.
|
BinaryFeatureCodec<T extends Feature> |
Implements common methods of
FeatureCodec s that read from PositionalBufferedStream s. |
FeatureCodecHeader |
A class to represent a header of a feature containing file.
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SimpleFeature |
A simple concrete Feature.
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TabixFeatureReader<T extends Feature,SOURCE> | |
Tribble |
Common, tribble wide constants and static functions
|
TribbleIndexedFeatureReader<T extends Feature,SOURCE> |
A reader for text feature files (i.e.
|