htsjdk.samtools.cram.encoding.external

Class ExternalByteCodec

java.lang.Object

htsjdk.samtools.cram.encoding.external.ExternalCodec<java.lang.Byte>

htsjdk.samtools.cram.encoding.external.ExternalByteCodec

All Implemented Interfaces:

CRAMCodec<java.lang.Byte>

public class ExternalByteCodec
extends ExternalCodec<java.lang.Byte>

Encode Bytes using an External Data Block

Field Summary

Fields inherited from class htsjdk.samtools.cram.encoding.external.ExternalCodec

inputStream, outputStream

Constructor Summary

Constructors

Constructor and Description
ExternalByteCodec(java.io.ByteArrayInputStream inputStream, java.io.ByteArrayOutputStream outputStream) Construct an External Codec for Bytes

Method Summary

Modifier and Type	Method and Description
java.lang.Byte	read() Read a single object from the stream
java.lang.Byte	read(int length) Read a array of specified length from the stream
void	write(java.lang.Byte object) Write an object to the stream

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExternalByteCodec

public ExternalByteCodec(java.io.ByteArrayInputStream inputStream,
                         java.io.ByteArrayOutputStream outputStream)

Construct an External Codec for Bytes

Parameters:

inputStream - the input bytestream to read from

outputStream - the output bytestream to write to

Method Detail

read

public java.lang.Byte read()

Description copied from interface: CRAMCodec

Read a single object from the stream

Returns:

an object from the stream

write

public void write(java.lang.Byte object)

Description copied from interface: CRAMCodec

Write an object to the stream

Parameters:

object - the object to write

read

public java.lang.Byte read(int length)

Description copied from interface: CRAMCodec

Read a array of specified length from the stream

Parameters:

length - the number of elements to read

Returns:

an object from the stream