public class SAMSortOrderChecker
extends java.lang.Object
Constructor and Description |
---|
SAMSortOrderChecker(SAMFileHeader.SortOrder sortOrder) |
Modifier and Type | Method and Description |
---|---|
SAMRecord |
getPreviousRecord() |
java.lang.String |
getSortKey(SAMRecord rec)
Return the sort key used for the given sort order.
|
boolean |
isSorted(SAMRecord rec)
Check if given SAMRecord violates sort order relative to previous SAMRecord.
|
public SAMSortOrderChecker(SAMFileHeader.SortOrder sortOrder)
public boolean isSorted(SAMRecord rec)
public SAMRecord getPreviousRecord()
public java.lang.String getSortKey(SAMRecord rec)