Interface | Description |
---|---|
VCFIDHeaderLine |
an interface for ID-based header lines
|
Class | Description |
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AbstractVCFCodec | |
VCF3Codec |
A feature codec for the VCF3 specification, to read older VCF files.
|
VCFCodec |
A feature codec for the VCF 4 specification
|
VCFCompoundHeaderLine |
a base class for compound header lines, which include info lines and format lines (so far)
|
VCFConstants | |
VCFContigHeaderLine |
A special class representing a contig VCF header line.
|
VCFEncoder |
Functions specific to encoding VCF records.
|
VCFFileReader |
Simplified interface for reading from VCF/BCF files.
|
VCFFilterHeaderLine | |
VCFFormatHeaderLine | |
VCFHeader |
A class to represent a VCF header
|
VCFHeaderLine | |
VCFHeaderLineTranslator |
A class for translating between vcf header versions
|
VCFInfoHeaderLine | |
VCFRecordCodec |
Writes VariantContext instances to an OutputStream without headers or metadata.
|
VCFSimpleHeaderLine | |
VCFStandardHeaderLines |
Manages header lines for standard VCF INFO and FORMAT fields.
|
VCFUtils |
Enum | Description |
---|---|
VCFCompoundHeaderLine.SupportedHeaderLineType | |
VCFHeader.HEADER_FIELDS | |
VCFHeaderLineCount |
the count encodings we use for fields in VCF header lines
|
VCFHeaderLineType |
the type encodings we use for fields in VCF header lines
|
VCFHeaderVersion |
information that identifies each header version
|