public class SAMRecordQueryNameComparator extends java.lang.Object implements SAMRecordComparator, java.io.Serializable
Constructor and Description |
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SAMRecordQueryNameComparator() |
Modifier and Type | Method and Description |
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int |
compare(SAMRecord samRecord1,
SAMRecord samRecord2) |
static int |
compareReadNames(java.lang.String readName1,
java.lang.String readName2)
Encapsulate algorithm for comparing read names in queryname-sorted file, since there have been
conversations about changing the behavior.
|
int |
fileOrderCompare(SAMRecord samRecord1,
SAMRecord samRecord2)
Less stringent compare method than the regular compare.
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public int compare(SAMRecord samRecord1, SAMRecord samRecord2)
compare
in interface java.util.Comparator<SAMRecord>
public int fileOrderCompare(SAMRecord samRecord1, SAMRecord samRecord2)
fileOrderCompare
in interface SAMRecordComparator
public static int compareReadNames(java.lang.String readName1, java.lang.String readName2)