Interface | Description |
---|---|
LazyGenotypesContext.LazyParser |
Simple lazy parser interface.
|
Class | Description |
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Allele |
Immutable representation of an allele.
|
CommonInfo |
Common utility routines for VariantContext and Genotype
|
FastGenotype |
This class encompasses all the basic information about a genotype.
|
Genotype |
This class encompasses all the basic information about a genotype.
|
GenotypeBuilder |
A builder class for genotypes
Provides convenience setter methods for all of the Genotype field
values.
|
GenotypeJEXLContext | |
GenotypeLikelihoods | |
GenotypeLikelihoods.GenotypeLikelihoodsAllelePair | |
GenotypesContext |
Represents an ordered collection of Genotype objects
|
LazyGenotypesContext |
Lazy-loading GenotypesContext.
|
LazyGenotypesContext.LazyData |
Returns the data used in the full GenotypesContext constructor
GenotypesContext.GenotypesContext(java.util.ArrayList, java.util.Map, java.util.List) |
VariantContext |
High-level overview
|
VariantContextBuilder |
Builder class for
VariantContext . |
VariantContextComparator |
A Comparator that orders VariantContexts by the ordering of the contigs/chromosomes in the List
provided at construction time, then by start position with each contig/chromosome.
|
VariantContextUtils | |
VariantContextUtils.JexlVCMatchExp |
A simple but common wrapper for matching VariantContext objects using JEXL expressions
|
Enum | Description |
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GenotypeType |
Summary types for Genotype objects
|
VariantContext.Type | |
VariantContext.Validation |