htsjdk.samtools

Class BinWithOffset

java.lang.Object

htsjdk.samtools.Bin

htsjdk.samtools.BinWithOffset

All Implemented Interfaces:

java.lang.Comparable<Bin>

public class BinWithOffset
extends Bin

An individual bin of a CSI index for BAM files. Extends the BAI index bin Bin with a 64 bit value, representing the virtual file offset of the first overlapping record.

Constructor Summary

Constructors

Constructor and Description
BinWithOffset(int referenceSequence, int binNumber, long lOffset)

Method Summary

Modifier and Type	Method and Description
long	getlOffset()

Methods inherited from class htsjdk.samtools.Bin

addInitialChunk, compareTo, containsChunks, equals, getBinNumber, getChunkList, getLastChunk, getReferenceSequence, hashCode, setChunkList, setLastChunk

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinWithOffset

public BinWithOffset(int referenceSequence,
                     int binNumber,
                     long lOffset)

Method Detail

getlOffset

public long getlOffset()