| Interface | Description |
|---|---|
| Gff3Feature |
Gff3 format spec is defined at https://github.com/The-Sequence-Ontology/Specifications/blob/31f62ad469b31769b43af42e0903448db1826925/gff3.md
Discontinuous features which are split between multiple lines in the gff files are implemented as separate features linked as "co-features"
|
| Class | Description |
|---|---|
| Gff3BaseData | |
| Gff3Codec |
Codec for parsing Gff3 files, as defined in https://github.com/The-Sequence-Ontology/Specifications/blob/31f62ad469b31769b43af42e0903448db1826925/gff3.md
Note that while spec states that all feature types must be defined in sequence ontology, this implementation makes no check on feature types, and allows any string as feature type
Each feature line in the Gff3 file will be emitted as a separate feature.
|
| Gff3FeatureImpl |
Gff3 format spec is defined at https://github.com/The-Sequence-Ontology/Specifications/blob/31f62ad469b31769b43af42e0903448db1826925/gff3.md
Discontinuous features which are split between multiple lines in the gff files are implemented as separate features linked as "co-features"
|
| SequenceRegion |
Represents a sequence region feature in a gff3 file.
|