public class Substitution extends java.lang.Object implements java.io.Serializable, ReadFeature
Modifier and Type | Field and Description |
---|---|
static int |
NO_CODE |
static byte |
operator |
Constructor and Description |
---|
Substitution(int position,
byte code) |
Substitution(int position,
byte base,
byte referenceBase) |
Modifier and Type | Method and Description |
---|---|
boolean |
equals(java.lang.Object obj) |
byte |
getBase() |
byte |
getCode() |
byte |
getOperator()
Read features are distinguished by operator, similar to cigar operator.
|
int |
getPosition() |
byte |
getReferenceBase() |
int |
hashCode() |
void |
setCode(byte code) |
java.lang.String |
toString() |
public static final int NO_CODE
public static final byte operator
public Substitution(int position, byte code)
public Substitution(int position, byte base, byte referenceBase)
public byte getCode()
public void setCode(byte code)
public byte getOperator()
ReadFeature
getOperator
in interface ReadFeature
public int getPosition()
getPosition
in interface ReadFeature
public byte getBase()
public byte getReferenceBase()
public boolean equals(java.lang.Object obj)
equals
in class java.lang.Object
public int hashCode()
hashCode
in class java.lang.Object
public java.lang.String toString()
toString
in class java.lang.Object