public class OverclippedReadFilter extends java.lang.Object implements SamRecordFilter
Constructor and Description |
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OverclippedReadFilter(int unclippedBasesThreshold,
boolean filterSingleEndClips) |
Modifier and Type | Method and Description |
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boolean |
filterOut(SAMRecord record)
Determines whether a SAMRecord matches this filter
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boolean |
filterOut(SAMRecord first,
SAMRecord second)
Determines whether a pair of SAMRecords matches this filter
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public OverclippedReadFilter(int unclippedBasesThreshold, boolean filterSingleEndClips)
public boolean filterOut(SAMRecord record)
SamRecordFilter
filterOut
in interface SamRecordFilter
record
- the SAMRecord to evaluatepublic boolean filterOut(SAMRecord first, SAMRecord second)
SamRecordFilter
filterOut
in interface SamRecordFilter
first
- the first SAMRecord to evaluatesecond
- the second SAMRecord to evaluate