public class SecondaryAlignmentFilter extends java.lang.Object implements SamRecordFilter
Constructor and Description |
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SecondaryAlignmentFilter() |
Modifier and Type | Method and Description |
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boolean |
filterOut(SAMRecord record)
Returns true if the read is marked as secondary.
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boolean |
filterOut(SAMRecord first,
SAMRecord second)
Returns true if either read is marked as secondary.
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public boolean filterOut(SAMRecord record)
filterOut
in interface SamRecordFilter
record
- the SAMRecord to evaluatepublic boolean filterOut(SAMRecord first, SAMRecord second)
filterOut
in interface SamRecordFilter
first
- the first SAMRecord to evaluatesecond
- the second SAMRecord to evaluate