htsjdk.samtools.util

Class IntervalUtil.IntervalCombiner

java.lang.Object

htsjdk.samtools.util.IntervalUtil.IntervalCombiner

Enclosing class:

IntervalUtil

public static class IntervalUtil.IntervalCombiner
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
IntervalCombiner()

Method Summary

Modifier and Type	Method and Description
IntervalList	combine(IntervalList intervalList)
boolean	isCombineAbutting()
boolean	isConcatenateNames()
boolean	isEnforceSameStrand()
IntervalUtil.IntervalCombiner	setCombineAbutting(boolean combineAbutting)
IntervalUtil.IntervalCombiner	setConcatenateNames(boolean concatenateNames)
IntervalUtil.IntervalCombiner	setEnforceSameStrand(boolean enforceSameStrand)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IntervalCombiner

public IntervalCombiner()

Method Detail

isCombineAbutting

public boolean isCombineAbutting()

setCombineAbutting

public IntervalUtil.IntervalCombiner setCombineAbutting(boolean combineAbutting)

isConcatenateNames

public boolean isConcatenateNames()

setConcatenateNames

public IntervalUtil.IntervalCombiner setConcatenateNames(boolean concatenateNames)

isEnforceSameStrand

public boolean isEnforceSameStrand()

setEnforceSameStrand

public IntervalUtil.IntervalCombiner setEnforceSameStrand(boolean enforceSameStrand)

combine

public IntervalList combine(IntervalList intervalList)