public class IntervalListCodec extends AsciiFeatureCodec<Interval>
Constructor and Description |
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IntervalListCodec() |
IntervalListCodec(SAMSequenceDictionary dict) |
Modifier and Type | Method and Description |
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boolean |
canDecode(java.lang.String s)
This function returns true iff the File potentialInput can be parsed by this
codec.
|
Interval |
decode(java.lang.String line) |
java.lang.Object |
readActualHeader(LineIterator lineIterator)
Read and return the header, or null if there is no header.
|
close, decode, isDone, makeIndexableSourceFromStream, makeSourceFromStream, readHeader
decodeLoc, getFeatureType
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getPathToDataFile, getTabixFormat
public IntervalListCodec()
public IntervalListCodec(SAMSequenceDictionary dict)
public Interval decode(java.lang.String line)
decode
in class AsciiFeatureCodec<Interval>
AsciiFeatureCodec.decode(htsjdk.tribble.readers.LineIterator)
public java.lang.Object readActualHeader(LineIterator lineIterator)
AsciiFeatureCodec
readActualHeader
in class AsciiFeatureCodec<Interval>
public boolean canDecode(java.lang.String s)
FeatureCodec
This function returns true iff the File potentialInput can be parsed by this codec. Note that checking the file's extension is a perfectly acceptable implementation of this method and file contents only rarely need to be checked.
There is an assumption that there's never a situation where two different Codecs return true for the same file. If this occurs, the recommendation would be to error out.
Note this function must never throw an error. All errors should be trapped and false returned.s
- the file to test for parsability with this codec