public class SAMTestUtil
extends java.lang.Object
Modifier and Type | Class and Description |
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static class |
SAMTestUtil.SanityCheckFailedException
Indicates that a required sanity-check condition was not met.
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Constructor and Description |
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SAMTestUtil() |
Modifier and Type | Method and Description |
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void |
assertPairValid(SAMRecord firstEnd,
SAMRecord secondEnd)
Basic sanity check for a pair of SAMRecords.
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void |
assertReadValid(SAMRecord read)
Basic sanity check for a SAMRecord.
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public void assertPairValid(SAMRecord firstEnd, SAMRecord secondEnd) throws SAMTestUtil.SanityCheckFailedException
SAMTestUtil.SanityCheckFailedException
- if the sanity check failedpublic void assertReadValid(SAMRecord read) throws SAMTestUtil.SanityCheckFailedException
SAMTestUtil.SanityCheckFailedException
- if the sanity check failed