public class TextCigarCodec
extends java.lang.Object
Constructor and Description |
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TextCigarCodec() |
Modifier and Type | Method and Description |
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static Cigar |
decode(java.lang.String textCigar)
Convert from String CIGAR representation to Cigar class representation.
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static java.lang.String |
encode(Cigar cigar)
Convert from Cigar class representation to String.
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public static java.lang.String encode(Cigar cigar)
cigar
- in Cigar class formatpublic static Cigar decode(java.lang.String textCigar)
textCigar
- CIGAR in String form ala SAM text file. "*" means empty CIGAR.java.lang.RuntimeException
- if textCigar is invalid at the most basic level.