public class ExampleSamUsage
extends java.lang.Object
Constructor and Description |
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ExampleSamUsage() |
Modifier and Type | Method and Description |
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void |
convertReadNamesToUpperCase(java.io.File inputSamOrBamFile,
java.io.File outputSamOrBamFile)
Read a SAM or BAM file, convert each read name to upper case, and write a new
SAM or BAM file.
|
static SeekableStream |
myIndexSeekableStream() |
void |
openSamExamples()
Example usages of
SamReaderFactory |
public static SeekableStream myIndexSeekableStream()
public void openSamExamples() throws java.net.MalformedURLException
SamReaderFactory
java.net.MalformedURLException
public void convertReadNamesToUpperCase(java.io.File inputSamOrBamFile, java.io.File outputSamOrBamFile) throws java.io.IOException
java.io.IOException